Hb_002284_160

Information

Type -
Description -
Location Contig2284: 124504-127107
Sequence    

Annotation

kegg
ID rcu:RCOM_1601720
description glyceraldehyde 3-phosphate dehydrogenase, putative (EC:1.2.1.13)
nr
ID XP_002510706.1
description glyceraldehyde 3-phosphate dehydrogenase, putative [Ricinus communis]
swissprot
ID P25857
description Glyceraldehyde-3-phosphate dehydrogenase GAPB, chloroplastic OS=Arabidopsis thaliana GN=GAPB PE=1 SV=2
trembl
ID B9R8R3
description Glyceraldehyde-3-phosphate dehydrogenase OS=Ricinus communis GN=RCOM_1601720 PE=3 SV=1
Gene Ontology
ID GO:0009535
description glyceraldehyde-3-phosphate dehydrogenase chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23805: 120460-123794 , PASA_asmbl_23807: 124463-127198
cDNA
(Sanger)
(ID:Location)		 011_N16.ab1: 120493-123587 , 019_K05.ab1: 120493-123516 , 021_F19.ab1: 120597-123668 , 026_A22.ab1: 120597-123693 , 039_D01.ab1: 120597-123709 , 042_N07.ab1: 120597-123670

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002284_160 0.0 - - glyceraldehyde 3-phosphate dehydrogenase, putative [Ricinus communis]
2 Hb_001115_070 0.0283080936 - - RecName: Full=CASP-like protein 2C1; Short=PtCASPL2C1 [Populus trichocarpa]
3 Hb_000002_500 0.075181124 - - PREDICTED: uncharacterized protein LOC105632094 isoform X1 [Jatropha curcas]
4 Hb_004017_030 0.0786181166 - - PREDICTED: 2-hydroxyisoflavanone dehydratase-like [Jatropha curcas]
5 Hb_010136_010 0.079778945 - - Putative receptor-like protein kinase [Glycine soja]
6 Hb_127629_010 0.0817658359 - - hypothetical protein CICLE_v10005216mg [Citrus clementina]
7 Hb_000815_090 0.0939620868 - - PREDICTED: uncharacterized protein LOC105630464 isoform X1 [Jatropha curcas]
8 Hb_004117_380 0.0944485871 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 14 [Jatropha curcas]
9 Hb_018591_020 0.0950791302 - - Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplast precursor, putative [Ricinus communis]
10 Hb_003209_150 0.099114453 - - CLE9, putative [Ricinus communis]
11 Hb_001677_170 0.1006006406 - - hypothetical protein M569_03661, partial [Genlisea aurea]
12 Hb_002007_220 0.1014014003 - - PREDICTED: signal recognition particle 43 kDa protein, chloroplastic [Jatropha curcas]
13 Hb_003435_030 0.1019687816 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
14 Hb_000155_020 0.1027105484 - - PREDICTED: triose phosphate/phosphate translocator TPT, chloroplastic isoform X1 [Jatropha curcas]
15 Hb_000046_120 0.1039985348 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose-5-phosphate synthase putative 1-deoxy-D-xylulose 5-phosphate synthase [Hevea brasiliensis]
16 Hb_008412_040 0.104882934 - - unnamed protein product [Vitis vinifera]
17 Hb_025557_060 0.1054138818 transcription factor TF Family: MYB Myb-related protein 306, putative isoform 1 [Theobroma cacao]
18 Hb_012395_090 0.1057343015 - - PREDICTED: protein PROTON GRADIENT REGULATION 5, chloroplastic [Jatropha curcas]
19 Hb_003654_020 0.105779614 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
20 Hb_000031_320 0.106574319 - - unnamed protein product [Vitis vinifera]

Gene co-expression network

sample Hb_002284_160 Hb_002284_160 Hb_001115_070 Hb_001115_070 Hb_002284_160--Hb_001115_070 Hb_000002_500 Hb_000002_500 Hb_002284_160--Hb_000002_500 Hb_004017_030 Hb_004017_030 Hb_002284_160--Hb_004017_030 Hb_010136_010 Hb_010136_010 Hb_002284_160--Hb_010136_010 Hb_127629_010 Hb_127629_010 Hb_002284_160--Hb_127629_010 Hb_000815_090 Hb_000815_090 Hb_002284_160--Hb_000815_090 Hb_001115_070--Hb_127629_010 Hb_001115_070--Hb_000002_500 Hb_001115_070--Hb_010136_010 Hb_001115_070--Hb_004017_030 Hb_018591_020 Hb_018591_020 Hb_001115_070--Hb_018591_020 Hb_000046_120 Hb_000046_120 Hb_000002_500--Hb_000046_120 Hb_000002_500--Hb_018591_020 Hb_102179_010 Hb_102179_010 Hb_000002_500--Hb_102179_010 Hb_003435_030 Hb_003435_030 Hb_000002_500--Hb_003435_030 Hb_007462_020 Hb_007462_020 Hb_004017_030--Hb_007462_020 Hb_000155_020 Hb_000155_020 Hb_004017_030--Hb_000155_020 Hb_001369_340 Hb_001369_340 Hb_004017_030--Hb_001369_340 Hb_003767_060 Hb_003767_060 Hb_004017_030--Hb_003767_060 Hb_004017_030--Hb_010136_010 Hb_010136_010--Hb_003435_030 Hb_010136_010--Hb_000155_020 Hb_011013_040 Hb_011013_040 Hb_010136_010--Hb_011013_040 Hb_012395_090 Hb_012395_090 Hb_010136_010--Hb_012395_090 Hb_008412_040 Hb_008412_040 Hb_127629_010--Hb_008412_040 Hb_004117_380 Hb_004117_380 Hb_127629_010--Hb_004117_380 Hb_127629_010--Hb_000002_500 Hb_127629_010--Hb_010136_010 Hb_132840_170 Hb_132840_170 Hb_000815_090--Hb_132840_170 Hb_013394_120 Hb_013394_120 Hb_000815_090--Hb_013394_120 Hb_000815_090--Hb_000002_500 Hb_000815_090--Hb_001115_070 Hb_000818_090 Hb_000818_090 Hb_000815_090--Hb_000818_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0545012 23.0888 58.147 37.3472 0.0264121 0.0375346
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.186231 0.195351 0 0.828437 71.2801

CAGE analysis