Hb_127629_010

Information

Type -
Description -
Location Contig127629: 1612-2830
Sequence    

Annotation

kegg
ID cic:CICLE_v10005216mg
description hypothetical protein
nr
ID XP_006420212.1
description hypothetical protein CICLE_v10005216mg [Citrus clementina]
swissprot
ID P48489
description Serine/threonine-protein phosphatase PP1 OS=Oryza sativa subsp. japonica GN=Os03g0268000 PE=2 SV=2
trembl
ID V4RZV0
description Serine/threonine-protein phosphatase OS=Citrus clementina GN=CICLE_v10005216mg PE=3 SV=1
Gene Ontology
ID GO:0008287
description serine threonine protein phosphatase pp1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_127629_010 0.0 - - hypothetical protein CICLE_v10005216mg [Citrus clementina]
2 Hb_008412_040 0.062641214 - - unnamed protein product [Vitis vinifera]
3 Hb_001115_070 0.0699144995 - - RecName: Full=CASP-like protein 2C1; Short=PtCASPL2C1 [Populus trichocarpa]
4 Hb_002284_160 0.0817658359 - - glyceraldehyde 3-phosphate dehydrogenase, putative [Ricinus communis]
5 Hb_004117_380 0.0895903653 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 14 [Jatropha curcas]
6 Hb_000002_500 0.0939043469 - - PREDICTED: uncharacterized protein LOC105632094 isoform X1 [Jatropha curcas]
7 Hb_010136_010 0.0964583056 - - Putative receptor-like protein kinase [Glycine soja]
8 Hb_001942_010 0.0972186776 - - hypothetical protein JCGZ_20930 [Jatropha curcas]
9 Hb_012395_090 0.0986623674 - - PREDICTED: protein PROTON GRADIENT REGULATION 5, chloroplastic [Jatropha curcas]
10 Hb_003435_030 0.0993567825 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
11 Hb_000413_050 0.0999955627 - - PREDICTED: transcription factor bHLH112 isoform X2 [Jatropha curcas]
12 Hb_000881_020 0.1033139891 - - hypothetical protein MIMGU_mgv1a022110mg, partial [Erythranthe guttata]
13 Hb_000046_120 0.1041210679 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose-5-phosphate synthase putative 1-deoxy-D-xylulose 5-phosphate synthase [Hevea brasiliensis]
14 Hb_000116_160 0.1059463768 transcription factor TF Family: RWP-RK hypothetical protein JCGZ_22391 [Jatropha curcas]
15 Hb_029695_090 0.1068218269 - - PREDICTED: probable inactive patatin-like protein 9 [Jatropha curcas]
16 Hb_011013_040 0.1098010412 transcription factor TF Family: C2C2-YABBY unknown [Populus trichocarpa]
17 Hb_000155_020 0.1099434371 - - PREDICTED: triose phosphate/phosphate translocator TPT, chloroplastic isoform X1 [Jatropha curcas]
18 Hb_011909_050 0.1104132104 - - PREDICTED: calcium-binding protein PBP1 [Jatropha curcas]
19 Hb_004223_150 0.1143356437 - - PREDICTED: cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG1-like [Jatropha curcas]
20 Hb_002007_220 0.1150234691 - - PREDICTED: signal recognition particle 43 kDa protein, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_127629_010 Hb_127629_010 Hb_008412_040 Hb_008412_040 Hb_127629_010--Hb_008412_040 Hb_001115_070 Hb_001115_070 Hb_127629_010--Hb_001115_070 Hb_002284_160 Hb_002284_160 Hb_127629_010--Hb_002284_160 Hb_004117_380 Hb_004117_380 Hb_127629_010--Hb_004117_380 Hb_000002_500 Hb_000002_500 Hb_127629_010--Hb_000002_500 Hb_010136_010 Hb_010136_010 Hb_127629_010--Hb_010136_010 Hb_002259_090 Hb_002259_090 Hb_008412_040--Hb_002259_090 Hb_008412_040--Hb_000002_500 Hb_001942_010 Hb_001942_010 Hb_008412_040--Hb_001942_010 Hb_008412_040--Hb_001115_070 Hb_008847_050 Hb_008847_050 Hb_008412_040--Hb_008847_050 Hb_001115_070--Hb_002284_160 Hb_001115_070--Hb_000002_500 Hb_001115_070--Hb_010136_010 Hb_004017_030 Hb_004017_030 Hb_001115_070--Hb_004017_030 Hb_018591_020 Hb_018591_020 Hb_001115_070--Hb_018591_020 Hb_002284_160--Hb_000002_500 Hb_002284_160--Hb_004017_030 Hb_002284_160--Hb_010136_010 Hb_000815_090 Hb_000815_090 Hb_002284_160--Hb_000815_090 Hb_001369_340 Hb_001369_340 Hb_004117_380--Hb_001369_340 Hb_000025_700 Hb_000025_700 Hb_004117_380--Hb_000025_700 Hb_003209_150 Hb_003209_150 Hb_004117_380--Hb_003209_150 Hb_004117_380--Hb_004017_030 Hb_005488_210 Hb_005488_210 Hb_004117_380--Hb_005488_210 Hb_005890_010 Hb_005890_010 Hb_004117_380--Hb_005890_010 Hb_000046_120 Hb_000046_120 Hb_000002_500--Hb_000046_120 Hb_000002_500--Hb_018591_020 Hb_102179_010 Hb_102179_010 Hb_000002_500--Hb_102179_010 Hb_003435_030 Hb_003435_030 Hb_000002_500--Hb_003435_030 Hb_010136_010--Hb_003435_030 Hb_000155_020 Hb_000155_020 Hb_010136_010--Hb_000155_020 Hb_011013_040 Hb_011013_040 Hb_010136_010--Hb_011013_040 Hb_010136_010--Hb_004017_030 Hb_012395_090 Hb_012395_090 Hb_010136_010--Hb_012395_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.11565 4.09157 2.98181 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 4.78387

CAGE analysis