Hb_102179_010

Information

Type -
Description -
Location Contig102179: 12254-20932
Sequence    

Annotation

kegg
ID rcu:RCOM_1711740
description protein binding protein, putative
nr
ID XP_002524159.1
description protein binding protein, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SDU0
description Protein binding protein, putative OS=Ricinus communis GN=RCOM_1711740 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01009: 12062-12534 , PASA_asmbl_01010: 18754-19161 , PASA_asmbl_01012: 19745-20321 , PASA_asmbl_01013: 20428-20596
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_102179_010 0.0 - - protein binding protein, putative [Ricinus communis]
2 Hb_004835_020 0.0441464182 - - PREDICTED: receptor-like protein 12 [Populus euphratica]
3 Hb_002246_030 0.0631169565 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
4 Hb_002182_010 0.0670035556 - - PREDICTED: glucan endo-1,3-beta-glucosidase-like [Jatropha curcas]
5 Hb_000500_240 0.0672170343 - - conserved hypothetical protein [Ricinus communis]
6 Hb_001047_210 0.0698733961 - - PSI reaction center subunit II [Citrus sinensis]
7 Hb_000520_040 0.0708689305 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 [Jatropha curcas]
8 Hb_000329_440 0.07180275 - - PREDICTED: F-box protein At5g51370-like [Jatropha curcas]
9 Hb_005694_160 0.0750215584 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000046_120 0.0778883428 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose-5-phosphate synthase putative 1-deoxy-D-xylulose 5-phosphate synthase [Hevea brasiliensis]
11 Hb_000958_090 0.0825109128 - - PREDICTED: cation/H(+) antiporter 28 [Jatropha curcas]
12 Hb_000002_500 0.0826333609 - - PREDICTED: uncharacterized protein LOC105632094 isoform X1 [Jatropha curcas]
13 Hb_005569_010 0.0831624635 - - Heme-binding protein, putative [Ricinus communis]
14 Hb_018591_020 0.0847434516 - - Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplast precursor, putative [Ricinus communis]
15 Hb_003435_030 0.088961111 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
16 Hb_173387_010 0.0900670332 - - hypothetical protein POPTR_0017s13190g, partial [Populus trichocarpa]
17 Hb_033363_040 0.0917312711 - - PREDICTED: probable galacturonosyltransferase-like 3 [Jatropha curcas]
18 Hb_132840_170 0.0918009779 transcription factor TF Family: NAC Transcription factor [Theobroma cacao]
19 Hb_060253_010 0.0951746453 - - hypothetical protein JCGZ_14707 [Jatropha curcas]
20 Hb_001098_040 0.0955878741 - - hypothetical protein JCGZ_00749 [Jatropha curcas]

Gene co-expression network

sample Hb_102179_010 Hb_102179_010 Hb_004835_020 Hb_004835_020 Hb_102179_010--Hb_004835_020 Hb_002246_030 Hb_002246_030 Hb_102179_010--Hb_002246_030 Hb_002182_010 Hb_002182_010 Hb_102179_010--Hb_002182_010 Hb_000500_240 Hb_000500_240 Hb_102179_010--Hb_000500_240 Hb_001047_210 Hb_001047_210 Hb_102179_010--Hb_001047_210 Hb_000520_040 Hb_000520_040 Hb_102179_010--Hb_000520_040 Hb_005569_010 Hb_005569_010 Hb_004835_020--Hb_005569_010 Hb_000329_440 Hb_000329_440 Hb_004835_020--Hb_000329_440 Hb_000958_090 Hb_000958_090 Hb_004835_020--Hb_000958_090 Hb_004835_020--Hb_000520_040 Hb_004835_020--Hb_001047_210 Hb_005694_160 Hb_005694_160 Hb_002246_030--Hb_005694_160 Hb_002246_030--Hb_001047_210 Hb_002246_030--Hb_000500_240 Hb_002246_030--Hb_004835_020 Hb_026549_060 Hb_026549_060 Hb_002246_030--Hb_026549_060 Hb_033363_040 Hb_033363_040 Hb_002182_010--Hb_033363_040 Hb_002182_010--Hb_002246_030 Hb_002182_010--Hb_004835_020 Hb_002182_010--Hb_001047_210 Hb_002182_010--Hb_000500_240 Hb_000500_240--Hb_000520_040 Hb_000500_240--Hb_005694_160 Hb_000500_240--Hb_000329_440 Hb_000500_240--Hb_001047_210 Hb_000329_780 Hb_000329_780 Hb_000500_240--Hb_000329_780 Hb_001047_210--Hb_000520_040 Hb_001047_210--Hb_000958_090 Hb_008847_050 Hb_008847_050 Hb_001047_210--Hb_008847_050 Hb_000520_040--Hb_000329_440 Hb_008536_020 Hb_008536_020 Hb_000520_040--Hb_008536_020 Hb_005337_100 Hb_005337_100 Hb_000520_040--Hb_005337_100 Hb_060253_010 Hb_060253_010 Hb_000520_040--Hb_060253_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.011655 1.99657 6.18971 6.98976 0.0716345 0.0164509
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.427741 11.5957

CAGE analysis