Hb_026549_060

Information

Type -
Description -
Location Contig26549: 49270-50447
Sequence    

Annotation

kegg
ID rcu:RCOM_0115810
description chloroplast-targeted copper chaperone, putative
nr
ID XP_002534052.1
description chloroplast-targeted copper chaperone, putative [Ricinus communis]
swissprot
ID Q94BT9
description Copper transport protein ATX1 OS=Arabidopsis thaliana GN=ATX1 PE=1 SV=1
trembl
ID B9T733
description Chloroplast-targeted copper chaperone, putative OS=Ricinus communis GN=RCOM_0115810 PE=4 SV=1
Gene Ontology
ID GO:0044707
description chloroplast-targeted copper

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27744: 49165-50435
cDNA
(Sanger)
(ID:Location)		 039_G02.ab1: 49436-50435

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_026549_060 0.0 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
2 Hb_001433_090 0.0541052426 - - Pectinesterase PPE8B precursor, putative [Ricinus communis]
3 Hb_001541_200 0.061060609 - - PREDICTED: BTB/POZ domain-containing protein At1g67900-like isoform X1 [Citrus sinensis]
4 Hb_000958_090 0.0643206525 - - PREDICTED: cation/H(+) antiporter 28 [Jatropha curcas]
5 Hb_020956_030 0.0692829924 - - PREDICTED: swi5-dependent recombination DNA repair protein 1 homolog [Jatropha curcas]
6 Hb_005183_050 0.0769686197 - - hypothetical protein RCOM_1590900 [Ricinus communis]
7 Hb_005010_030 0.0793248577 - - PREDICTED: lecithin-cholesterol acyltransferase-like 1 [Jatropha curcas]
8 Hb_001657_020 0.0800488687 - - heat shock family protein [Populus trichocarpa]
9 Hb_002246_030 0.0839172176 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
10 Hb_003162_060 0.0843146415 - - PREDICTED: MATH domain-containing protein At5g43560-like [Jatropha curcas]
11 Hb_001047_210 0.0861468005 - - PSI reaction center subunit II [Citrus sinensis]
12 Hb_000424_140 0.0870097556 - - Protein kinase APK1A, chloroplast precursor, putative [Ricinus communis]
13 Hb_005843_010 0.0881070176 - - PREDICTED: calmodulin-like protein 1 [Jatropha curcas]
14 Hb_086300_010 0.0884751767 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
15 Hb_000002_110 0.0900799165 - - hypothetical protein EUGRSUZ_B02140 [Eucalyptus grandis]
16 Hb_001557_010 0.090507236 - - PREDICTED: extensin [Jatropha curcas]
17 Hb_005532_030 0.0935795522 - - DNA binding protein, putative [Ricinus communis]
18 Hb_005842_010 0.0937076511 - - nitrate transporter, putative [Ricinus communis]
19 Hb_000083_210 0.0955867912 - - Major facilitator superfamily protein, putative [Theobroma cacao]
20 Hb_102179_010 0.0957431844 - - protein binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_026549_060 Hb_026549_060 Hb_001433_090 Hb_001433_090 Hb_026549_060--Hb_001433_090 Hb_001541_200 Hb_001541_200 Hb_026549_060--Hb_001541_200 Hb_000958_090 Hb_000958_090 Hb_026549_060--Hb_000958_090 Hb_020956_030 Hb_020956_030 Hb_026549_060--Hb_020956_030 Hb_005183_050 Hb_005183_050 Hb_026549_060--Hb_005183_050 Hb_005010_030 Hb_005010_030 Hb_026549_060--Hb_005010_030 Hb_000002_110 Hb_000002_110 Hb_001433_090--Hb_000002_110 Hb_010589_010 Hb_010589_010 Hb_001433_090--Hb_010589_010 Hb_001433_090--Hb_005183_050 Hb_001500_130 Hb_001500_130 Hb_001433_090--Hb_001500_130 Hb_001433_090--Hb_020956_030 Hb_001657_020 Hb_001657_020 Hb_001541_200--Hb_001657_020 Hb_001541_200--Hb_020956_030 Hb_001541_200--Hb_001433_090 Hb_001541_200--Hb_005183_050 Hb_003162_060 Hb_003162_060 Hb_001541_200--Hb_003162_060 Hb_000424_140 Hb_000424_140 Hb_000958_090--Hb_000424_140 Hb_001047_210 Hb_001047_210 Hb_000958_090--Hb_001047_210 Hb_004835_020 Hb_004835_020 Hb_000958_090--Hb_004835_020 Hb_173387_010 Hb_173387_010 Hb_000958_090--Hb_173387_010 Hb_005569_010 Hb_005569_010 Hb_000958_090--Hb_005569_010 Hb_020956_030--Hb_003162_060 Hb_086300_010 Hb_086300_010 Hb_020956_030--Hb_086300_010 Hb_020956_030--Hb_001657_020 Hb_000017_180 Hb_000017_180 Hb_005183_050--Hb_000017_180 Hb_005183_050--Hb_000002_110 Hb_003152_020 Hb_003152_020 Hb_005183_050--Hb_003152_020 Hb_005842_010 Hb_005842_010 Hb_005183_050--Hb_005842_010 Hb_001711_140 Hb_001711_140 Hb_005010_030--Hb_001711_140 Hb_002477_190 Hb_002477_190 Hb_005010_030--Hb_002477_190 Hb_000462_010 Hb_000462_010 Hb_005010_030--Hb_000462_010 Hb_006615_090 Hb_006615_090 Hb_005010_030--Hb_006615_090 Hb_005678_020 Hb_005678_020 Hb_005010_030--Hb_005678_020 Hb_005843_010 Hb_005843_010 Hb_005010_030--Hb_005843_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.668134 2.14222 4.13059 0.0440827 0.0264234
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.170676 6.39362

CAGE analysis