Hb_000424_140

Information

Type -
Description -
Location Contig424: 171278-173306
Sequence    

Annotation

kegg
ID rcu:RCOM_0707690
description Protein kinase APK1A, chloroplast precursor, putative (EC:2.7.10.2)
nr
ID XP_002516154.1
description Protein kinase APK1A, chloroplast precursor, putative [Ricinus communis]
swissprot
ID Q9CAH1
description Putative receptor-like protein kinase At1g72540 OS=Arabidopsis thaliana GN=At1g72540 PE=2 SV=1
trembl
ID B9RQY5
description Protein kinase APK1A, chloroplast, putative OS=Ricinus communis GN=RCOM_0707690 PE=4 SV=1
Gene Ontology
ID GO:0004672
description serine threonine-protein kinase at5g01020

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41921: 171370-173465
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000424_140 0.0 - - Protein kinase APK1A, chloroplast precursor, putative [Ricinus communis]
2 Hb_005569_010 0.0558732895 - - Heme-binding protein, putative [Ricinus communis]
3 Hb_000670_070 0.0642395669 - - PREDICTED: probable carbohydrate esterase At4g34215 [Jatropha curcas]
4 Hb_005842_010 0.0658843536 - - nitrate transporter, putative [Ricinus communis]
5 Hb_000958_090 0.0666672942 - - PREDICTED: cation/H(+) antiporter 28 [Jatropha curcas]
6 Hb_000608_190 0.0685587873 rubber biosynthesis Gene Name: Isopentenyl-diphosphate delta isomerase PREDICTED: isopentenyl-diphosphate Delta-isomerase I [Jatropha curcas]
7 Hb_009421_070 0.0803718751 - - PREDICTED: cell number regulator 1-like [Jatropha curcas]
8 Hb_004835_020 0.0812863805 - - PREDICTED: receptor-like protein 12 [Populus euphratica]
9 Hb_000329_440 0.0853256251 - - PREDICTED: F-box protein At5g51370-like [Jatropha curcas]
10 Hb_000520_040 0.0866078355 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 [Jatropha curcas]
11 Hb_026549_060 0.0870097556 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
12 Hb_003195_080 0.0883977227 - - PREDICTED: cytochrome P450 87A3-like [Jatropha curcas]
13 Hb_008536_020 0.089261479 - - PREDICTED: probable E3 ubiquitin-protein ligase RHA2B [Jatropha curcas]
14 Hb_000984_160 0.0926072145 - - PREDICTED: amino acid permease 6-like isoform X1 [Jatropha curcas]
15 Hb_000665_210 0.0930100211 - - PREDICTED: synaptotagmin-4 [Jatropha curcas]
16 Hb_000076_060 0.093686521 - - hypothetical protein RCOM_0586940 [Ricinus communis]
17 Hb_001098_040 0.0947709051 - - hypothetical protein JCGZ_00749 [Jatropha curcas]
18 Hb_001047_210 0.0966551286 - - PSI reaction center subunit II [Citrus sinensis]
19 Hb_020956_030 0.0983092528 - - PREDICTED: swi5-dependent recombination DNA repair protein 1 homolog [Jatropha curcas]
20 Hb_001541_200 0.1025013249 - - PREDICTED: BTB/POZ domain-containing protein At1g67900-like isoform X1 [Citrus sinensis]

Gene co-expression network

sample Hb_000424_140 Hb_000424_140 Hb_005569_010 Hb_005569_010 Hb_000424_140--Hb_005569_010 Hb_000670_070 Hb_000670_070 Hb_000424_140--Hb_000670_070 Hb_005842_010 Hb_005842_010 Hb_000424_140--Hb_005842_010 Hb_000958_090 Hb_000958_090 Hb_000424_140--Hb_000958_090 Hb_000608_190 Hb_000608_190 Hb_000424_140--Hb_000608_190 Hb_009421_070 Hb_009421_070 Hb_000424_140--Hb_009421_070 Hb_004835_020 Hb_004835_020 Hb_005569_010--Hb_004835_020 Hb_000984_160 Hb_000984_160 Hb_005569_010--Hb_000984_160 Hb_003195_080 Hb_003195_080 Hb_005569_010--Hb_003195_080 Hb_000329_440 Hb_000329_440 Hb_005569_010--Hb_000329_440 Hb_005569_010--Hb_000958_090 Hb_000670_070--Hb_000608_190 Hb_007620_020 Hb_007620_020 Hb_000670_070--Hb_007620_020 Hb_000670_070--Hb_005842_010 Hb_000654_020 Hb_000654_020 Hb_000670_070--Hb_000654_020 Hb_002245_060 Hb_002245_060 Hb_000670_070--Hb_002245_060 Hb_006242_050 Hb_006242_050 Hb_005842_010--Hb_006242_050 Hb_007163_110 Hb_007163_110 Hb_005842_010--Hb_007163_110 Hb_005842_010--Hb_009421_070 Hb_027472_060 Hb_027472_060 Hb_005842_010--Hb_027472_060 Hb_026549_060 Hb_026549_060 Hb_000958_090--Hb_026549_060 Hb_001047_210 Hb_001047_210 Hb_000958_090--Hb_001047_210 Hb_000958_090--Hb_004835_020 Hb_173387_010 Hb_173387_010 Hb_000958_090--Hb_173387_010 Hb_000608_190--Hb_007620_020 Hb_003358_030 Hb_003358_030 Hb_000608_190--Hb_003358_030 Hb_089124_010 Hb_089124_010 Hb_000608_190--Hb_089124_010 Hb_000608_190--Hb_000958_090 Hb_000665_210 Hb_000665_210 Hb_009421_070--Hb_000665_210 Hb_001206_100 Hb_001206_100 Hb_009421_070--Hb_001206_100 Hb_001098_040 Hb_001098_040 Hb_009421_070--Hb_001098_040 Hb_000784_060 Hb_000784_060 Hb_009421_070--Hb_000784_060 Hb_004032_190 Hb_004032_190 Hb_009421_070--Hb_004032_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.43468 6.78377 10.291 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.21931 17.2981

CAGE analysis