Hb_089124_010

Information

Type -
Description -
Location Contig89124: 1510-3216
Sequence    

Annotation

kegg
ID pop:POPTR_0018s09540g
description POPTRDRAFT_779386; hypothetical protein
nr
ID XP_002324455.2
description hypothetical protein POPTR_0018s09540g [Populus trichocarpa]
swissprot
ID Q9SGP2
description Receptor-like protein kinase HSL1 OS=Arabidopsis thaliana GN=HSL1 PE=2 SV=1
trembl
ID B9ILV1
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0018s09540g PE=3 SV=2
Gene Ontology
ID GO:0016021
description receptor-like protein kinase hsl1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_089124_010 0.0 - - hypothetical protein POPTR_0018s09540g [Populus trichocarpa]
2 Hb_007620_020 0.039414038 - - PREDICTED: cationic amino acid transporter 7, chloroplastic-like isoform X1 [Jatropha curcas]
3 Hb_000608_190 0.072353154 rubber biosynthesis Gene Name: Isopentenyl-diphosphate delta isomerase PREDICTED: isopentenyl-diphosphate Delta-isomerase I [Jatropha curcas]
4 Hb_004837_080 0.0845662099 transcription factor TF Family: MYB PREDICTED: transcription factor MYB46 [Jatropha curcas]
5 Hb_000670_070 0.1007796412 - - PREDICTED: probable carbohydrate esterase At4g34215 [Jatropha curcas]
6 Hb_080797_010 0.1020025841 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570-like [Citrus sinensis]
7 Hb_003358_030 0.1020276688 - - ankyrin-kinase, putative [Ricinus communis]
8 Hb_001269_540 0.1027588511 - - hypothetical protein VITISV_038016 [Vitis vinifera]
9 Hb_002245_060 0.1040387721 - - PREDICTED: kinesin-3 isoform X1 [Jatropha curcas]
10 Hb_001097_140 0.1046646708 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000254_080 0.1078585634 - - PREDICTED: uncharacterized protein LOC105635000 [Jatropha curcas]
12 Hb_000920_100 0.1082156226 - - o-methyltransferase, putative [Ricinus communis]
13 Hb_000665_210 0.1110192981 - - PREDICTED: synaptotagmin-4 [Jatropha curcas]
14 Hb_000122_230 0.1114157645 - - laccase, putative [Ricinus communis]
15 Hb_005057_030 0.1182306024 - - Leucoanthocyanidin dioxygenase, putative [Ricinus communis]
16 Hb_000424_140 0.1206353062 - - Protein kinase APK1A, chloroplast precursor, putative [Ricinus communis]
17 Hb_002119_150 0.1211361496 - - hypothetical protein POPTR_0008s13870g [Populus trichocarpa]
18 Hb_000265_030 0.1244382028 - - PREDICTED: subtilisin-like protease SBT5.3 [Jatropha curcas]
19 Hb_009421_070 0.125696805 - - PREDICTED: cell number regulator 1-like [Jatropha curcas]
20 Hb_000784_060 0.1278343586 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_089124_010 Hb_089124_010 Hb_007620_020 Hb_007620_020 Hb_089124_010--Hb_007620_020 Hb_000608_190 Hb_000608_190 Hb_089124_010--Hb_000608_190 Hb_004837_080 Hb_004837_080 Hb_089124_010--Hb_004837_080 Hb_000670_070 Hb_000670_070 Hb_089124_010--Hb_000670_070 Hb_080797_010 Hb_080797_010 Hb_089124_010--Hb_080797_010 Hb_003358_030 Hb_003358_030 Hb_089124_010--Hb_003358_030 Hb_007620_020--Hb_000608_190 Hb_007620_020--Hb_000670_070 Hb_007620_020--Hb_004837_080 Hb_002245_060 Hb_002245_060 Hb_007620_020--Hb_002245_060 Hb_000122_230 Hb_000122_230 Hb_007620_020--Hb_000122_230 Hb_000608_190--Hb_000670_070 Hb_000424_140 Hb_000424_140 Hb_000608_190--Hb_000424_140 Hb_000608_190--Hb_003358_030 Hb_000958_090 Hb_000958_090 Hb_000608_190--Hb_000958_090 Hb_000254_080 Hb_000254_080 Hb_004837_080--Hb_000254_080 Hb_002119_150 Hb_002119_150 Hb_004837_080--Hb_002119_150 Hb_001269_540 Hb_001269_540 Hb_004837_080--Hb_001269_540 Hb_004837_080--Hb_080797_010 Hb_004837_080--Hb_000122_230 Hb_000670_070--Hb_000424_140 Hb_005842_010 Hb_005842_010 Hb_000670_070--Hb_005842_010 Hb_000654_020 Hb_000654_020 Hb_000670_070--Hb_000654_020 Hb_000670_070--Hb_002245_060 Hb_080797_010--Hb_001269_540 Hb_001097_140 Hb_001097_140 Hb_080797_010--Hb_001097_140 Hb_080797_010--Hb_000122_230 Hb_000230_490 Hb_000230_490 Hb_080797_010--Hb_000230_490 Hb_080797_010--Hb_002119_150 Hb_029386_010 Hb_029386_010 Hb_003358_030--Hb_029386_010 Hb_004052_030 Hb_004052_030 Hb_003358_030--Hb_004052_030 Hb_001488_160 Hb_001488_160 Hb_003358_030--Hb_001488_160 Hb_000477_090 Hb_000477_090 Hb_003358_030--Hb_000477_090 Hb_003358_030--Hb_007620_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.142697 0.277156 0.76706 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.174542 1.49709

CAGE analysis