Hb_080797_010

Information

Type -
Description -
Location Contig80797: 1589-3317
Sequence    

Annotation

kegg
ID cit:102626815
description probable LRR receptor-like serine/threonine-protein kinase At3g47570-like
nr
ID XP_006484593.1
description PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570-like [Citrus sinensis]
swissprot
ID Q00874
description DNA-damage-repair/toleration protein DRT100 OS=Arabidopsis thaliana GN=DRT100 PE=2 SV=2
trembl
ID A0A067DC39
description Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g042573mg PE=4 SV=1
Gene Ontology
ID GO:0004672
description probable lrr receptor-like serine threonine-protein kinase at3g47570

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_080797_010 0.0 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570-like [Citrus sinensis]
2 Hb_001269_540 0.0544785514 - - hypothetical protein VITISV_038016 [Vitis vinifera]
3 Hb_004837_080 0.0683971637 transcription factor TF Family: MYB PREDICTED: transcription factor MYB46 [Jatropha curcas]
4 Hb_001097_140 0.0710364655 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000122_230 0.0791861144 - - laccase, putative [Ricinus communis]
6 Hb_000230_490 0.0820658543 - - conserved hypothetical protein [Ricinus communis]
7 Hb_002119_150 0.084526611 - - hypothetical protein POPTR_0008s13870g [Populus trichocarpa]
8 Hb_007620_020 0.0861228691 - - PREDICTED: cationic amino acid transporter 7, chloroplastic-like isoform X1 [Jatropha curcas]
9 Hb_000254_080 0.0873357562 - - PREDICTED: uncharacterized protein LOC105635000 [Jatropha curcas]
10 Hb_000176_050 0.09119494 - - glutamine amidotransferase class-I domain-containing family protein [Populus trichocarpa]
11 Hb_089124_010 0.1020025841 - - hypothetical protein POPTR_0018s09540g [Populus trichocarpa]
12 Hb_001408_200 0.1022475471 - - hypothetical protein JCGZ_08964 [Jatropha curcas]
13 Hb_186765_010 0.1053674255 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105629453 [Jatropha curcas]
14 Hb_008001_030 0.1129769339 - - PREDICTED: ent-kaurenoic acid oxidase 1-like isoform X1 [Jatropha curcas]
15 Hb_000920_100 0.1146798555 - - o-methyltransferase, putative [Ricinus communis]
16 Hb_005000_150 0.1159742748 - - conserved hypothetical protein [Ricinus communis]
17 Hb_140595_020 0.116174557 - - PREDICTED: vegetative cell wall protein gp1-like [Solanum lycopersicum]
18 Hb_008518_060 0.1180953332 - - PREDICTED: long chain acyl-CoA synthetase 1 [Jatropha curcas]
19 Hb_002245_060 0.1200922811 - - PREDICTED: kinesin-3 isoform X1 [Jatropha curcas]
20 Hb_000608_190 0.1276905353 rubber biosynthesis Gene Name: Isopentenyl-diphosphate delta isomerase PREDICTED: isopentenyl-diphosphate Delta-isomerase I [Jatropha curcas]

Gene co-expression network

sample Hb_080797_010 Hb_080797_010 Hb_001269_540 Hb_001269_540 Hb_080797_010--Hb_001269_540 Hb_004837_080 Hb_004837_080 Hb_080797_010--Hb_004837_080 Hb_001097_140 Hb_001097_140 Hb_080797_010--Hb_001097_140 Hb_000122_230 Hb_000122_230 Hb_080797_010--Hb_000122_230 Hb_000230_490 Hb_000230_490 Hb_080797_010--Hb_000230_490 Hb_002119_150 Hb_002119_150 Hb_080797_010--Hb_002119_150 Hb_001269_540--Hb_000230_490 Hb_001269_540--Hb_004837_080 Hb_001269_540--Hb_002119_150 Hb_000254_080 Hb_000254_080 Hb_001269_540--Hb_000254_080 Hb_140595_020 Hb_140595_020 Hb_001269_540--Hb_140595_020 Hb_004837_080--Hb_000254_080 Hb_004837_080--Hb_002119_150 Hb_007620_020 Hb_007620_020 Hb_004837_080--Hb_007620_020 Hb_004837_080--Hb_000122_230 Hb_000207_240 Hb_000207_240 Hb_001097_140--Hb_000207_240 Hb_003714_030 Hb_003714_030 Hb_001097_140--Hb_003714_030 Hb_001097_140--Hb_001269_540 Hb_186765_010 Hb_186765_010 Hb_001097_140--Hb_186765_010 Hb_001097_140--Hb_004837_080 Hb_002245_060 Hb_002245_060 Hb_000122_230--Hb_002245_060 Hb_001408_200 Hb_001408_200 Hb_000122_230--Hb_001408_200 Hb_000122_230--Hb_000254_080 Hb_000122_230--Hb_007620_020 Hb_000230_490--Hb_004837_080 Hb_001186_040 Hb_001186_040 Hb_000230_490--Hb_001186_040 Hb_000230_490--Hb_140595_020 Hb_000230_490--Hb_002119_150 Hb_002119_150--Hb_000254_080 Hb_000538_110 Hb_000538_110 Hb_002119_150--Hb_000538_110 Hb_000260_520 Hb_000260_520 Hb_002119_150--Hb_000260_520
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.135449 0.14439 0.861818 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0797212 1.30595

CAGE analysis