Hb_003714_030

Information

Type -
Description -
Location Contig3714: 43900-44235
Sequence    

Annotation

kegg
ID rcu:RCOM_0087290
description Serine/threonine-protein kinase PBS1, putative (EC:2.7.11.13)
nr
ID XP_012084348.1
description PREDICTED: receptor-like protein kinase FERONIA [Jatropha curcas]
swissprot
ID Q9SCZ4
description Receptor-like protein kinase FERONIA OS=Arabidopsis thaliana GN=FER PE=1 SV=1
trembl
ID A0A067JXD7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26519 PE=3 SV=1
Gene Ontology
ID GO:0004674
description kinase-like protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003714_030 0.0 - - PREDICTED: receptor-like protein kinase FERONIA [Jatropha curcas]
2 Hb_000207_240 0.0855820188 - - hypothetical protein RCOM_0686540 [Ricinus communis]
3 Hb_044380_010 0.0894023155 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Malus domestica]
4 Hb_001097_140 0.0966469321 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001248_140 0.1174036279 - - Thylakoid lumenal 19 kDa protein, chloroplast precursor, putative [Ricinus communis]
6 Hb_001396_130 0.1247750262 - - conserved hypothetical protein [Ricinus communis]
7 Hb_004530_010 0.1254529586 - - PREDICTED: uncharacterized protein LOC104898079 [Beta vulgaris subsp. vulgaris]
8 Hb_186765_010 0.1288752582 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105629453 [Jatropha curcas]
9 Hb_089124_010 0.1339358884 - - hypothetical protein POPTR_0018s09540g [Populus trichocarpa]
10 Hb_094437_020 0.1390864522 - - Xylem serine proteinase 1 precursor, putative [Ricinus communis]
11 Hb_006351_120 0.1396500696 - - hypothetical protein CICLE_v10030803mg [Citrus clementina]
12 Hb_094437_030 0.1405195493 - - hypothetical protein AMTR_s00420p00013340 [Amborella trichopoda]
13 Hb_080797_010 0.1406923526 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570-like [Citrus sinensis]
14 Hb_102761_010 0.1426374707 - - hypothetical protein JCGZ_21614 [Jatropha curcas]
15 Hb_007295_020 0.1465357794 - - Uncharacterized protein TCM_034658 [Theobroma cacao]
16 Hb_000856_210 0.1468956276 - - nitrate transporter, putative [Ricinus communis]
17 Hb_001629_050 0.1490530812 - - structural constituent of cell wall, putative [Ricinus communis]
18 Hb_125181_010 0.1510701458 - - PREDICTED: uncharacterized protein LOC104115096 [Nicotiana tomentosiformis]
19 Hb_027472_190 0.1511330596 transcription factor TF Family: MYB r2r3-myb transcription factor, putative [Ricinus communis]
20 Hb_006807_010 0.1513679024 - - hypothetical protein JCGZ_20881 [Jatropha curcas]

Gene co-expression network

sample Hb_003714_030 Hb_003714_030 Hb_000207_240 Hb_000207_240 Hb_003714_030--Hb_000207_240 Hb_044380_010 Hb_044380_010 Hb_003714_030--Hb_044380_010 Hb_001097_140 Hb_001097_140 Hb_003714_030--Hb_001097_140 Hb_001248_140 Hb_001248_140 Hb_003714_030--Hb_001248_140 Hb_001396_130 Hb_001396_130 Hb_003714_030--Hb_001396_130 Hb_004530_010 Hb_004530_010 Hb_003714_030--Hb_004530_010 Hb_000856_210 Hb_000856_210 Hb_000207_240--Hb_000856_210 Hb_000207_240--Hb_001097_140 Hb_006351_120 Hb_006351_120 Hb_000207_240--Hb_006351_120 Hb_019925_020 Hb_019925_020 Hb_000207_240--Hb_019925_020 Hb_000207_240--Hb_001396_130 Hb_044380_010--Hb_004530_010 Hb_186765_010 Hb_186765_010 Hb_044380_010--Hb_186765_010 Hb_044380_010--Hb_001396_130 Hb_011519_040 Hb_011519_040 Hb_044380_010--Hb_011519_040 Hb_044380_010--Hb_001248_140 Hb_080797_010 Hb_080797_010 Hb_001097_140--Hb_080797_010 Hb_001269_540 Hb_001269_540 Hb_001097_140--Hb_001269_540 Hb_001097_140--Hb_186765_010 Hb_004837_080 Hb_004837_080 Hb_001097_140--Hb_004837_080 Hb_001248_140--Hb_004530_010 Hb_102761_010 Hb_102761_010 Hb_001248_140--Hb_102761_010 Hb_000054_130 Hb_000054_130 Hb_001248_140--Hb_000054_130 Hb_010721_040 Hb_010721_040 Hb_001248_140--Hb_010721_040 Hb_001396_130--Hb_186765_010 Hb_001976_100 Hb_001976_100 Hb_001396_130--Hb_001976_100 Hb_000377_130 Hb_000377_130 Hb_001396_130--Hb_000377_130 Hb_006755_030 Hb_006755_030 Hb_001396_130--Hb_006755_030 Hb_004530_010--Hb_102761_010 Hb_004530_010--Hb_010721_040 Hb_000997_370 Hb_000997_370 Hb_004530_010--Hb_000997_370
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 2.03298 1.04727 9.69764 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 3.54078 16.9464

CAGE analysis