Hb_044380_010

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig44380: 23-634
Sequence    

Annotation

kegg
ID mdm:103437108
description putative disease resistance protein RGA3
nr
ID XP_008373790.1
description PREDICTED: putative disease resistance protein RGA3 [Malus domestica]
swissprot
ID Q7XA40
description Putative disease resistance protein RGA3 OS=Solanum bulbocastanum GN=RGA3 PE=2 SV=2
trembl
ID Q84NH6
description RCa6.2 NBS type resistance protein (Fragment) OS=Manihot esculenta PE=4 SV=1
Gene Ontology
ID GO:0043531
description disease resistance protein rga2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_044380_010 0.0 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Malus domestica]
2 Hb_003714_030 0.0894023155 - - PREDICTED: receptor-like protein kinase FERONIA [Jatropha curcas]
3 Hb_004530_010 0.0968613249 - - PREDICTED: uncharacterized protein LOC104898079 [Beta vulgaris subsp. vulgaris]
4 Hb_186765_010 0.1046268212 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105629453 [Jatropha curcas]
5 Hb_001396_130 0.1064925895 - - conserved hypothetical protein [Ricinus communis]
6 Hb_011519_040 0.1142769806 - - hypothetical protein POPTR_0015s04770g [Populus trichocarpa]
7 Hb_001248_140 0.1151653055 - - Thylakoid lumenal 19 kDa protein, chloroplast precursor, putative [Ricinus communis]
8 Hb_006755_030 0.1212183908 - - BURP domain-containing protein, putative [Theobroma cacao]
9 Hb_125181_010 0.1240141722 - - PREDICTED: uncharacterized protein LOC104115096 [Nicotiana tomentosiformis]
10 Hb_000377_130 0.1246263151 - - hypothetical protein POPTR_0016s00790g [Populus trichocarpa]
11 Hb_001097_140 0.1279522809 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000207_240 0.1360588968 - - hypothetical protein RCOM_0686540 [Ricinus communis]
13 Hb_091236_010 0.1391235386 - - hypothetical protein POPTR_0019s12290g [Populus trichocarpa]
14 Hb_019925_010 0.1392282374 - - PREDICTED: long-chain-alcohol oxidase FAO4A-like [Jatropha curcas]
15 Hb_080797_010 0.1412064502 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570-like [Citrus sinensis]
16 Hb_012077_010 0.1446356652 desease resistance Gene Name: NB-ARC Disease resistance protein RGA2, putative [Ricinus communis]
17 Hb_007590_030 0.1449336535 - - PREDICTED: iridoid synthase [Jatropha curcas]
18 Hb_001478_030 0.1452893514 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001221_250 0.1474819803 - - -
20 Hb_008714_030 0.148296625 - - Multidrug resistance protein ABC transporter family protein, putative [Theobroma cacao]

Gene co-expression network

sample Hb_044380_010 Hb_044380_010 Hb_003714_030 Hb_003714_030 Hb_044380_010--Hb_003714_030 Hb_004530_010 Hb_004530_010 Hb_044380_010--Hb_004530_010 Hb_186765_010 Hb_186765_010 Hb_044380_010--Hb_186765_010 Hb_001396_130 Hb_001396_130 Hb_044380_010--Hb_001396_130 Hb_011519_040 Hb_011519_040 Hb_044380_010--Hb_011519_040 Hb_001248_140 Hb_001248_140 Hb_044380_010--Hb_001248_140 Hb_000207_240 Hb_000207_240 Hb_003714_030--Hb_000207_240 Hb_001097_140 Hb_001097_140 Hb_003714_030--Hb_001097_140 Hb_003714_030--Hb_001248_140 Hb_003714_030--Hb_001396_130 Hb_003714_030--Hb_004530_010 Hb_102761_010 Hb_102761_010 Hb_004530_010--Hb_102761_010 Hb_010721_040 Hb_010721_040 Hb_004530_010--Hb_010721_040 Hb_000997_370 Hb_000997_370 Hb_004530_010--Hb_000997_370 Hb_004530_010--Hb_001248_140 Hb_186765_010--Hb_001396_130 Hb_000377_130 Hb_000377_130 Hb_186765_010--Hb_000377_130 Hb_186765_010--Hb_011519_040 Hb_006755_030 Hb_006755_030 Hb_186765_010--Hb_006755_030 Hb_186765_010--Hb_001097_140 Hb_002925_060 Hb_002925_060 Hb_186765_010--Hb_002925_060 Hb_001976_100 Hb_001976_100 Hb_001396_130--Hb_001976_100 Hb_001396_130--Hb_000377_130 Hb_001396_130--Hb_006755_030 Hb_001396_130--Hb_000207_240 Hb_011519_040--Hb_000377_130 Hb_011519_040--Hb_006755_030 Hb_091236_010 Hb_091236_010 Hb_011519_040--Hb_091236_010 Hb_000620_050 Hb_000620_050 Hb_011519_040--Hb_000620_050 Hb_001408_200 Hb_001408_200 Hb_011519_040--Hb_001408_200 Hb_001248_140--Hb_102761_010 Hb_000054_130 Hb_000054_130 Hb_001248_140--Hb_000054_130 Hb_001248_140--Hb_010721_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.195631 0.0821446 1.96995 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.471977 3.06428

CAGE analysis