Hb_006755_030

Information

Type -
Description -
Location Contig6755: 48594-50468
Sequence    

Annotation

kegg
ID tcc:TCM_037135
description BURP domain-containing protein, putative
nr
ID XP_007012035.1
description BURP domain-containing protein, putative [Theobroma cacao]
swissprot
ID Q0JEP3
description BURP domain-containing protein 5 OS=Oryza sativa subsp. japonica GN=BURP5 PE=2 SV=2
trembl
ID A0A061GRD4
description BURP domain-containing protein, putative OS=Theobroma cacao GN=TCM_037135 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006755_030 0.0 - - BURP domain-containing protein, putative [Theobroma cacao]
2 Hb_000377_130 0.0552802904 - - hypothetical protein POPTR_0016s00790g [Populus trichocarpa]
3 Hb_000959_110 0.0696667254 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 13 [Vitis vinifera]
4 Hb_011519_040 0.0728225101 - - hypothetical protein POPTR_0015s04770g [Populus trichocarpa]
5 Hb_186765_010 0.0854659615 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105629453 [Jatropha curcas]
6 Hb_184074_010 0.0921999811 - - PREDICTED: uncharacterized protein LOC105639054 [Jatropha curcas]
7 Hb_000334_030 0.1027660008 - - conserved hypothetical protein [Ricinus communis]
8 Hb_004930_020 0.1050342588 transcription factor TF Family: MYB PREDICTED: transcriptional activator Myb-like [Jatropha curcas]
9 Hb_001396_130 0.1064835007 - - conserved hypothetical protein [Ricinus communis]
10 Hb_004117_230 0.1152137151 - - lipid transfer precursor protein [Hevea brasiliensis]
11 Hb_000620_050 0.1153755227 - - PREDICTED: uncharacterized protein LOC105649924 [Jatropha curcas]
12 Hb_091236_010 0.1198443319 - - hypothetical protein POPTR_0019s12290g [Populus trichocarpa]
13 Hb_012077_010 0.1201037416 desease resistance Gene Name: NB-ARC Disease resistance protein RGA2, putative [Ricinus communis]
14 Hb_044380_010 0.1212183908 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Malus domestica]
15 Hb_000749_280 0.1275502814 - - PREDICTED: uncharacterized protein LOC105138169 [Populus euphratica]
16 Hb_001500_090 0.1305061436 - - conserved hypothetical protein [Ricinus communis]
17 Hb_004920_150 0.133642952 - - conserved hypothetical protein [Ricinus communis]
18 Hb_002925_060 0.1343453664 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_01547 [Jatropha curcas]
19 Hb_003371_280 0.1353802106 - - unnamed protein product [Vitis vinifera]
20 Hb_000193_320 0.1358091913 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_006755_030 Hb_006755_030 Hb_000377_130 Hb_000377_130 Hb_006755_030--Hb_000377_130 Hb_000959_110 Hb_000959_110 Hb_006755_030--Hb_000959_110 Hb_011519_040 Hb_011519_040 Hb_006755_030--Hb_011519_040 Hb_186765_010 Hb_186765_010 Hb_006755_030--Hb_186765_010 Hb_184074_010 Hb_184074_010 Hb_006755_030--Hb_184074_010 Hb_000334_030 Hb_000334_030 Hb_006755_030--Hb_000334_030 Hb_000377_130--Hb_011519_040 Hb_000377_130--Hb_186765_010 Hb_000377_130--Hb_000959_110 Hb_002925_060 Hb_002925_060 Hb_000377_130--Hb_002925_060 Hb_000620_050 Hb_000620_050 Hb_000377_130--Hb_000620_050 Hb_004930_020 Hb_004930_020 Hb_000959_110--Hb_004930_020 Hb_000959_110--Hb_184074_010 Hb_000959_110--Hb_000334_030 Hb_000959_110--Hb_186765_010 Hb_011519_040--Hb_186765_010 Hb_091236_010 Hb_091236_010 Hb_011519_040--Hb_091236_010 Hb_011519_040--Hb_000620_050 Hb_001408_200 Hb_001408_200 Hb_011519_040--Hb_001408_200 Hb_001396_130 Hb_001396_130 Hb_186765_010--Hb_001396_130 Hb_001097_140 Hb_001097_140 Hb_186765_010--Hb_001097_140 Hb_186765_010--Hb_002925_060 Hb_184074_010--Hb_000334_030 Hb_184074_010--Hb_000620_050 Hb_184074_010--Hb_004930_020 Hb_003371_280 Hb_003371_280 Hb_184074_010--Hb_003371_280 Hb_000334_030--Hb_004930_020 Hb_001500_090 Hb_001500_090 Hb_000334_030--Hb_001500_090 Hb_002750_030 Hb_002750_030 Hb_000334_030--Hb_002750_030 Hb_000193_320 Hb_000193_320 Hb_000334_030--Hb_000193_320
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.14363 0.0940594 3.25932 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.374088 2.96545

CAGE analysis