Hb_004930_020

Information

Type transcription factor
Description TF Family: MYB
Location Contig4930: 34310-35431
Sequence    

Annotation

kegg
ID pop:POPTR_0012s03650g
description POPTRDRAFT_569401; MYB transcription factor R2R3 type family protein
nr
ID XP_012065267.1
description PREDICTED: transcriptional activator Myb-like [Jatropha curcas]
swissprot
ID Q9FDW1
description Transcription factor MYB44 OS=Arabidopsis thaliana GN=MYB44 PE=2 SV=1
trembl
ID A0A097HUI3
description MYB family protein OS=Jatropha curcas PE=4 SV=1
Gene Ontology
ID GO:0003677
description transcriptional activator myb-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004930_020 0.0 transcription factor TF Family: MYB PREDICTED: transcriptional activator Myb-like [Jatropha curcas]
2 Hb_000334_030 0.0584374377 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000959_110 0.0757933802 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 13 [Vitis vinifera]
4 Hb_184074_010 0.0874971914 - - PREDICTED: uncharacterized protein LOC105639054 [Jatropha curcas]
5 Hb_001976_100 0.0916900339 - - PREDICTED: receptor-like cytosolic serine/threonine-protein kinase RBK1 isoform X2 [Jatropha curcas]
6 Hb_000009_250 0.1035153711 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
7 Hb_001019_030 0.1046388138 - - PREDICTED: 4-coumarate--CoA ligase 1-like [Jatropha curcas]
8 Hb_006755_030 0.1050342588 - - BURP domain-containing protein, putative [Theobroma cacao]
9 Hb_000377_130 0.1077714075 - - hypothetical protein POPTR_0016s00790g [Populus trichocarpa]
10 Hb_001396_130 0.1189455333 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000080_100 0.1190439587 transcription factor TF Family: MYB PREDICTED: transcriptional activator Myb-like [Jatropha curcas]
12 Hb_002750_030 0.1215119981 - - PREDICTED: protein IRX15-LIKE-like [Populus euphratica]
13 Hb_000193_320 0.1229772924 - - conserved hypothetical protein [Ricinus communis]
14 Hb_186765_010 0.1238654326 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105629453 [Jatropha curcas]
15 Hb_001268_290 0.124573535 - - PREDICTED: glutaredoxin-C1-like [Jatropha curcas]
16 Hb_002171_050 0.1256625641 - - PREDICTED: leucine-rich repeat receptor-like protein kinase PEPR1 [Populus euphratica]
17 Hb_001500_090 0.1282873508 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001709_080 0.1282896375 transcription factor TF Family: NAC NAC domain-containing protein, putative [Ricinus communis]
19 Hb_064047_020 0.1284101687 transcription factor TF Family: MYB hypothetical protein POPTR_0003s13190g [Populus trichocarpa]
20 Hb_042083_010 0.1314198426 - - PREDICTED: cellulose synthase A catalytic subunit 8 [UDP-forming] [Jatropha curcas]

Gene co-expression network

sample Hb_004930_020 Hb_004930_020 Hb_000334_030 Hb_000334_030 Hb_004930_020--Hb_000334_030 Hb_000959_110 Hb_000959_110 Hb_004930_020--Hb_000959_110 Hb_184074_010 Hb_184074_010 Hb_004930_020--Hb_184074_010 Hb_001976_100 Hb_001976_100 Hb_004930_020--Hb_001976_100 Hb_000009_250 Hb_000009_250 Hb_004930_020--Hb_000009_250 Hb_001019_030 Hb_001019_030 Hb_004930_020--Hb_001019_030 Hb_000334_030--Hb_184074_010 Hb_000334_030--Hb_000959_110 Hb_001500_090 Hb_001500_090 Hb_000334_030--Hb_001500_090 Hb_002750_030 Hb_002750_030 Hb_000334_030--Hb_002750_030 Hb_000193_320 Hb_000193_320 Hb_000334_030--Hb_000193_320 Hb_006755_030 Hb_006755_030 Hb_000959_110--Hb_006755_030 Hb_000959_110--Hb_184074_010 Hb_000377_130 Hb_000377_130 Hb_000959_110--Hb_000377_130 Hb_186765_010 Hb_186765_010 Hb_000959_110--Hb_186765_010 Hb_000620_050 Hb_000620_050 Hb_184074_010--Hb_000620_050 Hb_003371_280 Hb_003371_280 Hb_184074_010--Hb_003371_280 Hb_184074_010--Hb_006755_030 Hb_001976_100--Hb_000009_250 Hb_000023_180 Hb_000023_180 Hb_001976_100--Hb_000023_180 Hb_002835_070 Hb_002835_070 Hb_001976_100--Hb_002835_070 Hb_001396_130 Hb_001396_130 Hb_001976_100--Hb_001396_130 Hb_001976_100--Hb_000334_030 Hb_001709_080 Hb_001709_080 Hb_000009_250--Hb_001709_080 Hb_000368_040 Hb_000368_040 Hb_000009_250--Hb_000368_040 Hb_002171_050 Hb_002171_050 Hb_000009_250--Hb_002171_050 Hb_000080_100 Hb_000080_100 Hb_000009_250--Hb_000080_100 Hb_000009_250--Hb_002835_070 Hb_006386_010 Hb_006386_010 Hb_001019_030--Hb_006386_010 Hb_001268_290 Hb_001268_290 Hb_001019_030--Hb_001268_290 Hb_001019_030--Hb_184074_010 Hb_001019_030--Hb_000334_030 Hb_005116_040 Hb_005116_040 Hb_001019_030--Hb_005116_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.509151 0.153321 5.94247 0.0311197 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.51297 3.70514

CAGE analysis