Hb_002171_050

Information

Type -
Description -
Location Contig2171: 134476-135633
Sequence    

Annotation

kegg
ID rcu:RCOM_0811600
description serine-threonine protein kinase, plant-type, putative (EC:1.3.1.74)
nr
ID XP_011001048.1
description PREDICTED: leucine-rich repeat receptor-like protein kinase PEPR1 [Populus euphratica]
swissprot
ID Q00874
description DNA-damage-repair/toleration protein DRT100 OS=Arabidopsis thaliana GN=DRT100 PE=2 SV=2
trembl
ID B9RYA6
description Serine-threonine protein kinase, plant-type, putative OS=Ricinus communis GN=RCOM_0811600 PE=4 SV=1
Gene Ontology
ID GO:0005515
description serine-threonine protein plant-

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002171_050 0.0 - - PREDICTED: leucine-rich repeat receptor-like protein kinase PEPR1 [Populus euphratica]
2 Hb_000449_070 0.078283566 - - unnamed protein product [Vitis vinifera]
3 Hb_004625_020 0.0812047432 - - PREDICTED: nucleobase-ascorbate transporter 4 [Jatropha curcas]
4 Hb_004917_020 0.0830040588 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF2.2-like isoform X2 [Populus euphratica]
5 Hb_005614_020 0.0833008822 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 isoform X1 [Jatropha curcas]
6 Hb_133492_010 0.0836308653 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
7 Hb_002499_030 0.0841996587 - - receptor-kinase, putative [Ricinus communis]
8 Hb_001279_400 0.0861719317 - - PREDICTED: uncharacterized protein LOC105633544 [Jatropha curcas]
9 Hb_001195_710 0.0902028646 - - glycosyltransferase family GT8 protein [Populus deltoides]
10 Hb_001096_010 0.0907130689 - - PREDICTED: uncharacterized protein LOC105650448 [Jatropha curcas]
11 Hb_000009_250 0.0936687653 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
12 Hb_000368_040 0.0937925177 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
13 Hb_000864_050 0.0951430569 - - zinc finger protein, putative [Ricinus communis]
14 Hb_001511_220 0.0951480703 - - hypothetical protein POPTR_0008s06990g [Populus trichocarpa]
15 Hb_002835_070 0.0954413608 - - conserved hypothetical protein [Ricinus communis]
16 Hb_182869_010 0.1005624715 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
17 Hb_011224_070 0.1033481943 - - PREDICTED: solute carrier family 35 member E3 [Jatropha curcas]
18 Hb_000245_110 0.1058968629 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 12-like [Jatropha curcas]
19 Hb_001268_290 0.1079615315 - - PREDICTED: glutaredoxin-C1-like [Jatropha curcas]
20 Hb_001269_160 0.1085771659 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_002171_050 Hb_002171_050 Hb_000449_070 Hb_000449_070 Hb_002171_050--Hb_000449_070 Hb_004625_020 Hb_004625_020 Hb_002171_050--Hb_004625_020 Hb_004917_020 Hb_004917_020 Hb_002171_050--Hb_004917_020 Hb_005614_020 Hb_005614_020 Hb_002171_050--Hb_005614_020 Hb_133492_010 Hb_133492_010 Hb_002171_050--Hb_133492_010 Hb_002499_030 Hb_002499_030 Hb_002171_050--Hb_002499_030 Hb_000020_140 Hb_000020_140 Hb_000449_070--Hb_000020_140 Hb_004020_030 Hb_004020_030 Hb_000449_070--Hb_004020_030 Hb_002997_150 Hb_002997_150 Hb_000449_070--Hb_002997_150 Hb_071079_040 Hb_071079_040 Hb_000449_070--Hb_071079_040 Hb_011224_070 Hb_011224_070 Hb_000449_070--Hb_011224_070 Hb_004625_020--Hb_133492_010 Hb_180980_010 Hb_180980_010 Hb_004625_020--Hb_180980_010 Hb_005183_070 Hb_005183_070 Hb_004625_020--Hb_005183_070 Hb_142056_010 Hb_142056_010 Hb_004625_020--Hb_142056_010 Hb_000137_050 Hb_000137_050 Hb_004625_020--Hb_000137_050 Hb_002973_050 Hb_002973_050 Hb_004917_020--Hb_002973_050 Hb_001279_400 Hb_001279_400 Hb_004917_020--Hb_001279_400 Hb_133974_010 Hb_133974_010 Hb_004917_020--Hb_133974_010 Hb_004917_020--Hb_000137_050 Hb_002835_070 Hb_002835_070 Hb_004917_020--Hb_002835_070 Hb_003747_160 Hb_003747_160 Hb_005614_020--Hb_003747_160 Hb_005614_020--Hb_002499_030 Hb_005614_020--Hb_011224_070 Hb_015807_090 Hb_015807_090 Hb_005614_020--Hb_015807_090 Hb_004225_120 Hb_004225_120 Hb_005614_020--Hb_004225_120 Hb_042083_010 Hb_042083_010 Hb_005614_020--Hb_042083_010 Hb_133492_010--Hb_180980_010 Hb_000864_050 Hb_000864_050 Hb_133492_010--Hb_000864_050 Hb_133492_010--Hb_004917_020 Hb_029791_010 Hb_029791_010 Hb_133492_010--Hb_029791_010 Hb_001096_010 Hb_001096_010 Hb_002499_030--Hb_001096_010 Hb_070771_010 Hb_070771_010 Hb_002499_030--Hb_070771_010 Hb_002499_030--Hb_003747_160 Hb_003638_020 Hb_003638_020 Hb_002499_030--Hb_003638_020 Hb_001269_160 Hb_001269_160 Hb_002499_030--Hb_001269_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.055591 3.44511 2.71156 31.2135 0.142552 0.0392255
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.40192 14.2397

CAGE analysis