Hb_133492_010

Information

Type -
Description -
Location Contig133492: 3-440
Sequence    

Annotation

kegg
ID rcu:RCOM_1446200
description serine-threonine protein kinase, plant-type, putative (EC:1.3.1.74 2.7.11.23)
nr
ID XP_002512884.1
description serine-threonine protein kinase, plant-type, putative [Ricinus communis]
swissprot
ID C0LGP4
description Probable LRR receptor-like serine/threonine-protein kinase At3g47570 OS=Arabidopsis thaliana GN=At3g47570 PE=2 SV=1
trembl
ID B9RH25
description Serine-threonine protein kinase, plant-type, putative OS=Ricinus communis GN=RCOM_1446200 PE=3 SV=1
Gene Ontology
ID GO:0016021
description probable lrr receptor-like serine threonine-protein kinase at3g47570

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_133492_010 0.0 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
2 Hb_180980_010 0.0533463536 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Malus domestica]
3 Hb_000864_050 0.0783431229 - - zinc finger protein, putative [Ricinus communis]
4 Hb_004625_020 0.0816644398 - - PREDICTED: nucleobase-ascorbate transporter 4 [Jatropha curcas]
5 Hb_002171_050 0.0836308653 - - PREDICTED: leucine-rich repeat receptor-like protein kinase PEPR1 [Populus euphratica]
6 Hb_004917_020 0.0936523823 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF2.2-like isoform X2 [Populus euphratica]
7 Hb_029791_010 0.0937780774 - - hypothetical protein POPTR_0014s17480g [Populus trichocarpa]
8 Hb_011381_050 0.0958261818 - - PREDICTED: protein GLUTAMINE DUMPER 5-like [Jatropha curcas]
9 Hb_002835_070 0.0974004315 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000599_160 0.0982842199 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 21/22 [Jatropha curcas]
11 Hb_000137_050 0.0997581229 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001936_120 0.1020432823 - - PREDICTED: uncharacterized protein LOC105644623 isoform X1 [Jatropha curcas]
13 Hb_000449_070 0.1026787067 - - unnamed protein product [Vitis vinifera]
14 Hb_004032_290 0.1077279712 - - protein binding protein, putative [Ricinus communis]
15 Hb_001688_030 0.108493957 - - hypothetical protein JCGZ_10716 [Jatropha curcas]
16 Hb_002384_030 0.1103017449 - - conserved hypothetical protein [Ricinus communis]
17 Hb_006154_010 0.11094937 - - UDP-glucose 6-dehydrogenase, putative [Ricinus communis]
18 Hb_002388_070 0.1112550854 - - ring finger protein, putative [Ricinus communis]
19 Hb_002973_050 0.1115247314 - - hypothetical protein JCGZ_06491 [Jatropha curcas]
20 Hb_000197_260 0.1125628498 - - hypothetical protein PRUPE_ppa025448mg [Prunus persica]

Gene co-expression network

sample Hb_133492_010 Hb_133492_010 Hb_180980_010 Hb_180980_010 Hb_133492_010--Hb_180980_010 Hb_000864_050 Hb_000864_050 Hb_133492_010--Hb_000864_050 Hb_004625_020 Hb_004625_020 Hb_133492_010--Hb_004625_020 Hb_002171_050 Hb_002171_050 Hb_133492_010--Hb_002171_050 Hb_004917_020 Hb_004917_020 Hb_133492_010--Hb_004917_020 Hb_029791_010 Hb_029791_010 Hb_133492_010--Hb_029791_010 Hb_180980_010--Hb_029791_010 Hb_000197_260 Hb_000197_260 Hb_180980_010--Hb_000197_260 Hb_000599_160 Hb_000599_160 Hb_180980_010--Hb_000599_160 Hb_000317_170 Hb_000317_170 Hb_180980_010--Hb_000317_170 Hb_000137_050 Hb_000137_050 Hb_180980_010--Hb_000137_050 Hb_000864_050--Hb_000599_160 Hb_000864_050--Hb_180980_010 Hb_000864_050--Hb_002171_050 Hb_000864_050--Hb_004625_020 Hb_001936_120 Hb_001936_120 Hb_000864_050--Hb_001936_120 Hb_004625_020--Hb_002171_050 Hb_004625_020--Hb_180980_010 Hb_005183_070 Hb_005183_070 Hb_004625_020--Hb_005183_070 Hb_142056_010 Hb_142056_010 Hb_004625_020--Hb_142056_010 Hb_004625_020--Hb_000137_050 Hb_000449_070 Hb_000449_070 Hb_002171_050--Hb_000449_070 Hb_002171_050--Hb_004917_020 Hb_005614_020 Hb_005614_020 Hb_002171_050--Hb_005614_020 Hb_002499_030 Hb_002499_030 Hb_002171_050--Hb_002499_030 Hb_002973_050 Hb_002973_050 Hb_004917_020--Hb_002973_050 Hb_001279_400 Hb_001279_400 Hb_004917_020--Hb_001279_400 Hb_133974_010 Hb_133974_010 Hb_004917_020--Hb_133974_010 Hb_004917_020--Hb_000137_050 Hb_002835_070 Hb_002835_070 Hb_004917_020--Hb_002835_070 Hb_000000_260 Hb_000000_260 Hb_029791_010--Hb_000000_260 Hb_029791_010--Hb_000317_170 Hb_029791_010--Hb_001936_120 Hb_029791_010--Hb_000599_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.59215 1.26677 10.3638 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.502488 3.82642

CAGE analysis