Hb_000000_260

Information

Type -
Description -
Location Contig0: 471913-472995
Sequence    

Annotation

kegg
ID pop:POPTR_0002s13400g
description POPTRDRAFT_755031; glycosyl transferase family 8 family protein
nr
ID XP_012071772.1
description PREDICTED: probable galacturonosyltransferase-like 1 [Jatropha curcas]
swissprot
ID Q9LN68
description Probable galacturonosyltransferase-like 1 OS=Arabidopsis thaliana GN=GATL1 PE=2 SV=1
trembl
ID A0A067L2X7
description Hexosyltransferase OS=Jatropha curcas GN=JCGZ_04384 PE=3 SV=1
Gene Ontology
ID GO:0016757
description probable galacturonosyltransferase-like 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000000_260 0.0 - - PREDICTED: probable galacturonosyltransferase-like 1 [Jatropha curcas]
2 Hb_000317_170 0.0661389646 - - PREDICTED: E3 ubiquitin-protein ligase RING1 [Jatropha curcas]
3 Hb_029791_010 0.0688231067 - - hypothetical protein POPTR_0014s17480g [Populus trichocarpa]
4 Hb_001680_050 0.0894634732 - - -
5 Hb_007579_030 0.0926447435 - - receptor protein kinase, putative [Ricinus communis]
6 Hb_000983_130 0.0928909466 - - transcription factor, putative [Ricinus communis]
7 Hb_152914_010 0.0935812429 - - PREDICTED: polcalcin Syr v 3-like [Nicotiana sylvestris]
8 Hb_004450_090 0.0942267916 - - TRANSPARENT TESTA 12 protein, putative [Ricinus communis]
9 Hb_000197_260 0.0942875225 - - hypothetical protein PRUPE_ppa025448mg [Prunus persica]
10 Hb_000030_230 0.095171058 - - PREDICTED: pyruvate kinase, cytosolic isozyme [Jatropha curcas]
11 Hb_000599_160 0.1006561602 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 21/22 [Jatropha curcas]
12 Hb_180980_010 0.1011211452 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Malus domestica]
13 Hb_004102_200 0.1043515976 - - PREDICTED: putative UDP-rhamnose:rhamnosyltransferase 1 [Jatropha curcas]
14 Hb_002960_030 0.1047898987 - - hypothetical protein POPTR_0002s02190g [Populus trichocarpa]
15 Hb_000856_030 0.1052396494 - - ATP binding protein, putative [Ricinus communis]
16 Hb_002534_070 0.1061499189 - - PREDICTED: uncharacterized protein LOC105640545 [Jatropha curcas]
17 Hb_103225_030 0.1065004333 transcription factor TF Family: Orphans DNA binding protein, putative [Ricinus communis]
18 Hb_001936_120 0.1073433103 - - PREDICTED: uncharacterized protein LOC105644623 isoform X1 [Jatropha curcas]
19 Hb_029238_040 0.1078681774 transcription factor TF Family: NAC PREDICTED: NAC transcription factor NAM-B2 [Jatropha curcas]
20 Hb_001366_300 0.1089042622 - - GERMIN-LIKE protein 10 [Populus trichocarpa]

Gene co-expression network

sample Hb_000000_260 Hb_000000_260 Hb_000317_170 Hb_000317_170 Hb_000000_260--Hb_000317_170 Hb_029791_010 Hb_029791_010 Hb_000000_260--Hb_029791_010 Hb_001680_050 Hb_001680_050 Hb_000000_260--Hb_001680_050 Hb_007579_030 Hb_007579_030 Hb_000000_260--Hb_007579_030 Hb_000983_130 Hb_000983_130 Hb_000000_260--Hb_000983_130 Hb_152914_010 Hb_152914_010 Hb_000000_260--Hb_152914_010 Hb_000317_170--Hb_001680_050 Hb_000856_030 Hb_000856_030 Hb_000317_170--Hb_000856_030 Hb_000307_060 Hb_000307_060 Hb_000317_170--Hb_000307_060 Hb_000317_170--Hb_029791_010 Hb_000599_160 Hb_000599_160 Hb_000317_170--Hb_000599_160 Hb_180980_010 Hb_180980_010 Hb_029791_010--Hb_180980_010 Hb_001936_120 Hb_001936_120 Hb_029791_010--Hb_001936_120 Hb_133492_010 Hb_133492_010 Hb_029791_010--Hb_133492_010 Hb_029791_010--Hb_000599_160 Hb_001680_050--Hb_007579_030 Hb_029665_010 Hb_029665_010 Hb_001680_050--Hb_029665_010 Hb_000368_040 Hb_000368_040 Hb_001680_050--Hb_000368_040 Hb_000197_260 Hb_000197_260 Hb_001680_050--Hb_000197_260 Hb_001680_050--Hb_000856_030 Hb_001401_120 Hb_001401_120 Hb_007579_030--Hb_001401_120 Hb_007579_030--Hb_029665_010 Hb_001366_300 Hb_001366_300 Hb_007579_030--Hb_001366_300 Hb_029238_040 Hb_029238_040 Hb_007579_030--Hb_029238_040 Hb_007579_030--Hb_000197_260 Hb_004102_200 Hb_004102_200 Hb_000983_130--Hb_004102_200 Hb_004450_090 Hb_004450_090 Hb_000983_130--Hb_004450_090 Hb_000983_130--Hb_029238_040 Hb_002960_030 Hb_002960_030 Hb_000983_130--Hb_002960_030 Hb_152277_010 Hb_152277_010 Hb_000983_130--Hb_152277_010 Hb_152914_010--Hb_000197_260 Hb_000137_050 Hb_000137_050 Hb_152914_010--Hb_000137_050 Hb_152914_010--Hb_007579_030 Hb_002186_110 Hb_002186_110 Hb_152914_010--Hb_002186_110 Hb_152914_010--Hb_180980_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.737833 43.77 21.9099 153.542 0.312954 0.0432877
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.688926 0.939253 0.133649 2.16066 61.7471

CAGE analysis