Hb_152914_010

Information

Type -
Description -
Location Contig152914: 777-1043
Sequence    

Annotation

kegg
ID tcc:TCM_033854
description Calcium-binding EF-hand family protein, putative
nr
ID XP_009776175.1
description PREDICTED: polcalcin Syr v 3-like [Nicotiana sylvestris]
swissprot
ID Q9M7R0
description Calcium-binding allergen Ole e 8 OS=Olea europaea PE=1 SV=1
trembl
ID F6GZZ7
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g10600 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_152914_010 0.0 - - PREDICTED: polcalcin Syr v 3-like [Nicotiana sylvestris]
2 Hb_000197_260 0.0708160558 - - hypothetical protein PRUPE_ppa025448mg [Prunus persica]
3 Hb_000137_050 0.0739740322 - - conserved hypothetical protein [Ricinus communis]
4 Hb_007579_030 0.0928461101 - - receptor protein kinase, putative [Ricinus communis]
5 Hb_000000_260 0.0935812429 - - PREDICTED: probable galacturonosyltransferase-like 1 [Jatropha curcas]
6 Hb_002186_110 0.0941135526 - - hypothetical protein CICLE_v10024045mg, partial [Citrus clementina]
7 Hb_180980_010 0.0955597098 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Malus domestica]
8 Hb_000317_170 0.0993903315 - - PREDICTED: E3 ubiquitin-protein ligase RING1 [Jatropha curcas]
9 Hb_007101_070 0.1020540547 - - PREDICTED: serine/threonine-protein kinase PBS1 [Jatropha curcas]
10 Hb_001680_050 0.1048272019 - - -
11 Hb_000856_030 0.1080344384 - - ATP binding protein, putative [Ricinus communis]
12 Hb_005183_070 0.1080976465 - - PREDICTED: calmodulin-like protein 5 [Solanum lycopersicum]
13 Hb_029791_010 0.1082102347 - - hypothetical protein POPTR_0014s17480g [Populus trichocarpa]
14 Hb_004450_090 0.1130756168 - - TRANSPARENT TESTA 12 protein, putative [Ricinus communis]
15 Hb_003582_030 0.1144420448 - - PREDICTED: serine/threonine-protein kinase BRI1-like 2 [Jatropha curcas]
16 Hb_029665_010 0.1181223183 transcription factor TF Family: NAC NAC domain-containing protein, putative [Ricinus communis]
17 Hb_000030_230 0.1184197932 - - PREDICTED: pyruvate kinase, cytosolic isozyme [Jatropha curcas]
18 Hb_001936_120 0.1190285647 - - PREDICTED: uncharacterized protein LOC105644623 isoform X1 [Jatropha curcas]
19 Hb_133492_010 0.1198242148 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
20 Hb_000087_190 0.1201139138 - - hypothetical protein CICLE_v10033278mg [Citrus clementina]

Gene co-expression network

sample Hb_152914_010 Hb_152914_010 Hb_000197_260 Hb_000197_260 Hb_152914_010--Hb_000197_260 Hb_000137_050 Hb_000137_050 Hb_152914_010--Hb_000137_050 Hb_007579_030 Hb_007579_030 Hb_152914_010--Hb_007579_030 Hb_000000_260 Hb_000000_260 Hb_152914_010--Hb_000000_260 Hb_002186_110 Hb_002186_110 Hb_152914_010--Hb_002186_110 Hb_180980_010 Hb_180980_010 Hb_152914_010--Hb_180980_010 Hb_005183_070 Hb_005183_070 Hb_000197_260--Hb_005183_070 Hb_029665_010 Hb_029665_010 Hb_000197_260--Hb_029665_010 Hb_001680_050 Hb_001680_050 Hb_000197_260--Hb_001680_050 Hb_000197_260--Hb_002186_110 Hb_000197_260--Hb_007579_030 Hb_000856_030 Hb_000856_030 Hb_000137_050--Hb_000856_030 Hb_000137_050--Hb_000197_260 Hb_004917_020 Hb_004917_020 Hb_000137_050--Hb_004917_020 Hb_000137_050--Hb_180980_010 Hb_000317_170 Hb_000317_170 Hb_000137_050--Hb_000317_170 Hb_007579_030--Hb_001680_050 Hb_001401_120 Hb_001401_120 Hb_007579_030--Hb_001401_120 Hb_007579_030--Hb_029665_010 Hb_001366_300 Hb_001366_300 Hb_007579_030--Hb_001366_300 Hb_029238_040 Hb_029238_040 Hb_007579_030--Hb_029238_040 Hb_000000_260--Hb_000317_170 Hb_029791_010 Hb_029791_010 Hb_000000_260--Hb_029791_010 Hb_000000_260--Hb_001680_050 Hb_000000_260--Hb_007579_030 Hb_000983_130 Hb_000983_130 Hb_000000_260--Hb_000983_130 Hb_011381_050 Hb_011381_050 Hb_002186_110--Hb_011381_050 Hb_115572_010 Hb_115572_010 Hb_002186_110--Hb_115572_010 Hb_000172_450 Hb_000172_450 Hb_002186_110--Hb_000172_450 Hb_002186_110--Hb_180980_010 Hb_133492_010 Hb_133492_010 Hb_180980_010--Hb_133492_010 Hb_180980_010--Hb_029791_010 Hb_180980_010--Hb_000197_260 Hb_000599_160 Hb_000599_160 Hb_180980_010--Hb_000599_160 Hb_180980_010--Hb_000317_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.221277 12.2347 5.4545 45.9265 1.05789 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.32723 18.0015

CAGE analysis