Hb_001680_050

Information

Type -
Description -
Location Contig1680: 83631-85488
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15607: 83464-83764
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001680_050 0.0 - - -
2 Hb_007579_030 0.062803063 - - receptor protein kinase, putative [Ricinus communis]
3 Hb_000317_170 0.066342082 - - PREDICTED: E3 ubiquitin-protein ligase RING1 [Jatropha curcas]
4 Hb_029665_010 0.068768923 transcription factor TF Family: NAC NAC domain-containing protein, putative [Ricinus communis]
5 Hb_000368_040 0.0692543218 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
6 Hb_000197_260 0.0760037853 - - hypothetical protein PRUPE_ppa025448mg [Prunus persica]
7 Hb_000856_030 0.0779092373 - - ATP binding protein, putative [Ricinus communis]
8 Hb_000000_260 0.0894634732 - - PREDICTED: probable galacturonosyltransferase-like 1 [Jatropha curcas]
9 Hb_007545_220 0.0969904777 - - PREDICTED: uncharacterized protein LOC105632565 [Jatropha curcas]
10 Hb_005183_070 0.0992993629 - - PREDICTED: calmodulin-like protein 5 [Solanum lycopersicum]
11 Hb_001401_120 0.100681834 - - hypothetical protein JCGZ_04273 [Jatropha curcas]
12 Hb_000599_160 0.1012930685 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 21/22 [Jatropha curcas]
13 Hb_180980_010 0.1026723872 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Malus domestica]
14 Hb_152914_010 0.1048272019 - - PREDICTED: polcalcin Syr v 3-like [Nicotiana sylvestris]
15 Hb_000953_110 0.1063113105 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105629453 [Jatropha curcas]
16 Hb_029238_040 0.10861888 transcription factor TF Family: NAC PREDICTED: NAC transcription factor NAM-B2 [Jatropha curcas]
17 Hb_000137_050 0.1113924863 - - conserved hypothetical protein [Ricinus communis]
18 Hb_061783_010 0.1121320709 - - PREDICTED: uncharacterized protein LOC105124983 isoform X4 [Populus euphratica]
19 Hb_148262_010 0.112624191 - - conserved hypothetical protein [Ricinus communis]
20 Hb_001366_300 0.1133362786 - - GERMIN-LIKE protein 10 [Populus trichocarpa]

Gene co-expression network

sample Hb_001680_050 Hb_001680_050 Hb_007579_030 Hb_007579_030 Hb_001680_050--Hb_007579_030 Hb_000317_170 Hb_000317_170 Hb_001680_050--Hb_000317_170 Hb_029665_010 Hb_029665_010 Hb_001680_050--Hb_029665_010 Hb_000368_040 Hb_000368_040 Hb_001680_050--Hb_000368_040 Hb_000197_260 Hb_000197_260 Hb_001680_050--Hb_000197_260 Hb_000856_030 Hb_000856_030 Hb_001680_050--Hb_000856_030 Hb_001401_120 Hb_001401_120 Hb_007579_030--Hb_001401_120 Hb_007579_030--Hb_029665_010 Hb_001366_300 Hb_001366_300 Hb_007579_030--Hb_001366_300 Hb_029238_040 Hb_029238_040 Hb_007579_030--Hb_029238_040 Hb_007579_030--Hb_000197_260 Hb_000000_260 Hb_000000_260 Hb_000317_170--Hb_000000_260 Hb_000317_170--Hb_000856_030 Hb_000307_060 Hb_000307_060 Hb_000317_170--Hb_000307_060 Hb_029791_010 Hb_029791_010 Hb_000317_170--Hb_029791_010 Hb_000599_160 Hb_000599_160 Hb_000317_170--Hb_000599_160 Hb_029665_010--Hb_000197_260 Hb_029665_010--Hb_000368_040 Hb_005183_070 Hb_005183_070 Hb_029665_010--Hb_005183_070 Hb_029665_010--Hb_001401_120 Hb_000368_040--Hb_000856_030 Hb_000368_040--Hb_005183_070 Hb_000009_250 Hb_000009_250 Hb_000368_040--Hb_000009_250 Hb_000368_040--Hb_000317_170 Hb_000197_260--Hb_005183_070 Hb_152914_010 Hb_152914_010 Hb_000197_260--Hb_152914_010 Hb_002186_110 Hb_002186_110 Hb_000197_260--Hb_002186_110 Hb_000137_050 Hb_000137_050 Hb_000856_030--Hb_000137_050 Hb_000856_030--Hb_007579_030 Hb_000856_030--Hb_000197_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0130338 1.18956 0.361225 4.92296 0.0122056 0.0228506
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.02968 0 0 0.0558907 2.10438

CAGE analysis