Hb_029238_040

Information

Type transcription factor
Description TF Family: NAC
Location Contig29238: 45505-46254
Sequence    

Annotation

kegg
ID rcu:RCOM_0615030
description NAC domain-containing protein, putative
nr
ID XP_012090474.1
description PREDICTED: NAC transcription factor NAM-B2 [Jatropha curcas]
swissprot
ID A2YMR0
description NAC transcription factor ONAC010 OS=Oryza sativa subsp. indica GN=ONAC010 PE=3 SV=1
trembl
ID R4NEQ6
description NAC transcription factor 020 OS=Jatropha curcas GN=JCGZ_00057 PE=4 SV=1
Gene Ontology
ID GO:0005634
description nac domain-containing protein 68

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_029238_040 0.0 transcription factor TF Family: NAC PREDICTED: NAC transcription factor NAM-B2 [Jatropha curcas]
2 Hb_156850_050 0.0675928709 - - PREDICTED: uncharacterized protein LOC105635250 [Jatropha curcas]
3 Hb_004102_200 0.071554124 - - PREDICTED: putative UDP-rhamnose:rhamnosyltransferase 1 [Jatropha curcas]
4 Hb_001401_120 0.0757784835 - - hypothetical protein JCGZ_04273 [Jatropha curcas]
5 Hb_000983_130 0.0788936755 - - transcription factor, putative [Ricinus communis]
6 Hb_007579_030 0.0791640903 - - receptor protein kinase, putative [Ricinus communis]
7 Hb_004450_090 0.0938205484 - - TRANSPARENT TESTA 12 protein, putative [Ricinus communis]
8 Hb_061783_010 0.0997013978 - - PREDICTED: uncharacterized protein LOC105124983 isoform X4 [Populus euphratica]
9 Hb_001366_300 0.1016840717 - - GERMIN-LIKE protein 10 [Populus trichocarpa]
10 Hb_000000_260 0.1078681774 - - PREDICTED: probable galacturonosyltransferase-like 1 [Jatropha curcas]
11 Hb_001680_050 0.10861888 - - -
12 Hb_148262_010 0.1123529879 - - conserved hypothetical protein [Ricinus communis]
13 Hb_026124_020 0.116252787 - - PREDICTED: uncharacterized protein LOC105644241 isoform X1 [Jatropha curcas]
14 Hb_029665_010 0.1223692033 transcription factor TF Family: NAC NAC domain-containing protein, putative [Ricinus communis]
15 Hb_077774_010 0.1260170126 - - PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like [Jatropha curcas]
16 Hb_007545_220 0.1267972887 - - PREDICTED: uncharacterized protein LOC105632565 [Jatropha curcas]
17 Hb_152277_010 0.1294854959 - - PREDICTED: 9-cis-epoxycarotenoid dioxygenase NCED3, chloroplastic-like [Jatropha curcas]
18 Hb_009117_020 0.1316439671 - - RALF-LIKE 32 family protein [Populus trichocarpa]
19 Hb_000197_260 0.1320240122 - - hypothetical protein PRUPE_ppa025448mg [Prunus persica]
20 Hb_158189_010 0.133217106 - - Flavonol 3-sulfotransferase, putative [Ricinus communis]

Gene co-expression network

sample Hb_029238_040 Hb_029238_040 Hb_156850_050 Hb_156850_050 Hb_029238_040--Hb_156850_050 Hb_004102_200 Hb_004102_200 Hb_029238_040--Hb_004102_200 Hb_001401_120 Hb_001401_120 Hb_029238_040--Hb_001401_120 Hb_000983_130 Hb_000983_130 Hb_029238_040--Hb_000983_130 Hb_007579_030 Hb_007579_030 Hb_029238_040--Hb_007579_030 Hb_004450_090 Hb_004450_090 Hb_029238_040--Hb_004450_090 Hb_156850_050--Hb_004102_200 Hb_156850_050--Hb_007579_030 Hb_061783_010 Hb_061783_010 Hb_156850_050--Hb_061783_010 Hb_156850_050--Hb_001401_120 Hb_000096_050 Hb_000096_050 Hb_156850_050--Hb_000096_050 Hb_004102_200--Hb_000983_130 Hb_004102_200--Hb_004450_090 Hb_152277_010 Hb_152277_010 Hb_004102_200--Hb_152277_010 Hb_004102_200--Hb_061783_010 Hb_148262_010 Hb_148262_010 Hb_001401_120--Hb_148262_010 Hb_009117_020 Hb_009117_020 Hb_001401_120--Hb_009117_020 Hb_026124_020 Hb_026124_020 Hb_001401_120--Hb_026124_020 Hb_001401_120--Hb_007579_030 Hb_001366_300 Hb_001366_300 Hb_001401_120--Hb_001366_300 Hb_000983_130--Hb_004450_090 Hb_002960_030 Hb_002960_030 Hb_000983_130--Hb_002960_030 Hb_000983_130--Hb_152277_010 Hb_000000_260 Hb_000000_260 Hb_000983_130--Hb_000000_260 Hb_001680_050 Hb_001680_050 Hb_007579_030--Hb_001680_050 Hb_029665_010 Hb_029665_010 Hb_007579_030--Hb_029665_010 Hb_007579_030--Hb_001366_300 Hb_000197_260 Hb_000197_260 Hb_007579_030--Hb_000197_260 Hb_002534_070 Hb_002534_070 Hb_004450_090--Hb_002534_070 Hb_004450_090--Hb_061783_010 Hb_004450_090--Hb_000000_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.116783 0.0371919 0.331409 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.161047

CAGE analysis