Hb_026124_020

Information

Type -
Description -
Location Contig26124: 10176-14965
Sequence    

Annotation

kegg
ID pop:POPTR_0001s41420g
description COP1-interacting protein 7
nr
ID XP_012084915.1
description PREDICTED: uncharacterized protein LOC105644241 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JT04
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20957 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27337: 12375-13687
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_026124_020 0.0 - - PREDICTED: uncharacterized protein LOC105644241 isoform X1 [Jatropha curcas]
2 Hb_148262_010 0.0395207893 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000012_380 0.0633191093 transcription factor TF Family: MYB-related conserved hypothetical protein [Ricinus communis]
4 Hb_001401_120 0.0708401044 - - hypothetical protein JCGZ_04273 [Jatropha curcas]
5 Hb_000245_110 0.0795865665 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 12-like [Jatropha curcas]
6 Hb_001366_300 0.0889533508 - - GERMIN-LIKE protein 10 [Populus trichocarpa]
7 Hb_077774_010 0.0932657152 - - PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like [Jatropha curcas]
8 Hb_003090_190 0.0961240823 - - PREDICTED: 17.3 kDa class I heat shock protein-like [Nelumbo nucifera]
9 Hb_009117_020 0.0999528431 - - RALF-LIKE 32 family protein [Populus trichocarpa]
10 Hb_007579_030 0.101931874 - - receptor protein kinase, putative [Ricinus communis]
11 Hb_000328_030 0.1069820933 - - PREDICTED: cellulose synthase A catalytic subunit 7 [UDP-forming] [Jatropha curcas]
12 Hb_001377_230 0.107640808 - - PREDICTED: uncharacterized protein LOC105135159 [Populus euphratica]
13 Hb_042083_010 0.1111819106 - - PREDICTED: cellulose synthase A catalytic subunit 8 [UDP-forming] [Jatropha curcas]
14 Hb_000165_260 0.1112285294 - - PREDICTED: uncharacterized protein LOC105133752 isoform X2 [Populus euphratica]
15 Hb_005614_020 0.111849712 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 isoform X1 [Jatropha curcas]
16 Hb_007227_030 0.114589403 - - hypothetical protein JCGZ_24975 [Jatropha curcas]
17 Hb_029238_040 0.116252787 transcription factor TF Family: NAC PREDICTED: NAC transcription factor NAM-B2 [Jatropha curcas]
18 Hb_135052_010 0.1163422391 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
19 Hb_015807_090 0.1190485856 - - PREDICTED: probable galacturonosyltransferase 12 [Jatropha curcas]
20 Hb_009522_010 0.1214305835 - - hypothetical protein POPTR_0006s18790g [Populus trichocarpa]

Gene co-expression network

sample Hb_026124_020 Hb_026124_020 Hb_148262_010 Hb_148262_010 Hb_026124_020--Hb_148262_010 Hb_000012_380 Hb_000012_380 Hb_026124_020--Hb_000012_380 Hb_001401_120 Hb_001401_120 Hb_026124_020--Hb_001401_120 Hb_000245_110 Hb_000245_110 Hb_026124_020--Hb_000245_110 Hb_001366_300 Hb_001366_300 Hb_026124_020--Hb_001366_300 Hb_077774_010 Hb_077774_010 Hb_026124_020--Hb_077774_010 Hb_148262_010--Hb_001401_120 Hb_009117_020 Hb_009117_020 Hb_148262_010--Hb_009117_020 Hb_148262_010--Hb_000012_380 Hb_148262_010--Hb_000245_110 Hb_007579_030 Hb_007579_030 Hb_148262_010--Hb_007579_030 Hb_000012_380--Hb_000245_110 Hb_003090_190 Hb_003090_190 Hb_000012_380--Hb_003090_190 Hb_042083_010 Hb_042083_010 Hb_000012_380--Hb_042083_010 Hb_000328_030 Hb_000328_030 Hb_000012_380--Hb_000328_030 Hb_001401_120--Hb_009117_020 Hb_001401_120--Hb_007579_030 Hb_029238_040 Hb_029238_040 Hb_001401_120--Hb_029238_040 Hb_001401_120--Hb_001366_300 Hb_000245_110--Hb_003090_190 Hb_000245_110--Hb_042083_010 Hb_000245_110--Hb_000328_030 Hb_005614_020 Hb_005614_020 Hb_000245_110--Hb_005614_020 Hb_001366_300--Hb_077774_010 Hb_001366_300--Hb_007579_030 Hb_001366_300--Hb_148262_010 Hb_000983_130 Hb_000983_130 Hb_001366_300--Hb_000983_130 Hb_003008_020 Hb_003008_020 Hb_077774_010--Hb_003008_020 Hb_001902_040 Hb_001902_040 Hb_077774_010--Hb_001902_040 Hb_005675_070 Hb_005675_070 Hb_077774_010--Hb_005675_070 Hb_009522_010 Hb_009522_010 Hb_077774_010--Hb_009522_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.718695 0.382084 3.82288 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 2.44833

CAGE analysis