Hb_077774_010

Information

Type -
Description -
Location Contig77774: 3-581
Sequence    

Annotation

kegg
ID pop:POPTR_0015s04000g
description POPTRDRAFT_574939; hypothetical protein
nr
ID XP_012092458.1
description PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like [Jatropha curcas]
swissprot
ID O23530
description Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1 OS=Arabidopsis thaliana GN=SNC1 PE=1 SV=3
trembl
ID B9IE71
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0015s04000g PE=4 SV=2
Gene Ontology
ID GO:0005524
description tmv resistance protein n-like isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_077774_010 0.0 - - PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like [Jatropha curcas]
2 Hb_001366_300 0.0773505973 - - GERMIN-LIKE protein 10 [Populus trichocarpa]
3 Hb_003008_020 0.0898913659 - - auxin-responsive family protein [Populus trichocarpa]
4 Hb_026124_020 0.0932657152 - - PREDICTED: uncharacterized protein LOC105644241 isoform X1 [Jatropha curcas]
5 Hb_001902_040 0.0984843366 - - conserved hypothetical protein [Ricinus communis]
6 Hb_005675_070 0.1039777392 - - hypothetical protein EUGRSUZ_K01585 [Eucalyptus grandis]
7 Hb_009522_010 0.1043600359 - - hypothetical protein POPTR_0006s18790g [Populus trichocarpa]
8 Hb_008689_010 0.1133908183 - - hypothetical protein POPTR_0006s25330g [Populus trichocarpa]
9 Hb_002986_030 0.1136836381 - - hypothetical protein JCGZ_12380 [Jatropha curcas]
10 Hb_148262_010 0.1175067191 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001401_120 0.1194285334 - - hypothetical protein JCGZ_04273 [Jatropha curcas]
12 Hb_015934_090 0.120729545 - - PREDICTED: uncharacterized protein LOC105640158 [Jatropha curcas]
13 Hb_000749_300 0.1225226638 - - PREDICTED: uncharacterized protein LOC105129180 [Populus euphratica]
14 Hb_000012_380 0.1226499479 transcription factor TF Family: MYB-related conserved hypothetical protein [Ricinus communis]
15 Hb_158189_010 0.1254643617 - - Flavonol 3-sulfotransferase, putative [Ricinus communis]
16 Hb_029238_040 0.1260170126 transcription factor TF Family: NAC PREDICTED: NAC transcription factor NAM-B2 [Jatropha curcas]
17 Hb_000752_040 0.1317443438 - - PREDICTED: uncharacterized protein LOC104884990 [Beta vulgaris subsp. vulgaris]
18 Hb_005790_010 0.1326682757 - - hypothetical protein POPTR_0004s24080g [Populus trichocarpa]
19 Hb_002193_080 0.1340176919 - - PREDICTED: multiple C2 and transmembrane domain-containing protein 1 [Jatropha curcas]
20 Hb_009620_110 0.134228053 - - -

Gene co-expression network

sample Hb_077774_010 Hb_077774_010 Hb_001366_300 Hb_001366_300 Hb_077774_010--Hb_001366_300 Hb_003008_020 Hb_003008_020 Hb_077774_010--Hb_003008_020 Hb_026124_020 Hb_026124_020 Hb_077774_010--Hb_026124_020 Hb_001902_040 Hb_001902_040 Hb_077774_010--Hb_001902_040 Hb_005675_070 Hb_005675_070 Hb_077774_010--Hb_005675_070 Hb_009522_010 Hb_009522_010 Hb_077774_010--Hb_009522_010 Hb_007579_030 Hb_007579_030 Hb_001366_300--Hb_007579_030 Hb_001366_300--Hb_026124_020 Hb_001401_120 Hb_001401_120 Hb_001366_300--Hb_001401_120 Hb_148262_010 Hb_148262_010 Hb_001366_300--Hb_148262_010 Hb_000983_130 Hb_000983_130 Hb_001366_300--Hb_000983_130 Hb_003050_330 Hb_003050_330 Hb_003008_020--Hb_003050_330 Hb_008689_010 Hb_008689_010 Hb_003008_020--Hb_008689_010 Hb_036790_110 Hb_036790_110 Hb_003008_020--Hb_036790_110 Hb_002193_080 Hb_002193_080 Hb_003008_020--Hb_002193_080 Hb_000752_040 Hb_000752_040 Hb_003008_020--Hb_000752_040 Hb_026124_020--Hb_148262_010 Hb_000012_380 Hb_000012_380 Hb_026124_020--Hb_000012_380 Hb_026124_020--Hb_001401_120 Hb_000245_110 Hb_000245_110 Hb_026124_020--Hb_000245_110 Hb_002986_030 Hb_002986_030 Hb_001902_040--Hb_002986_030 Hb_000749_300 Hb_000749_300 Hb_001902_040--Hb_000749_300 Hb_001902_040--Hb_008689_010 Hb_015934_090 Hb_015934_090 Hb_001902_040--Hb_015934_090 Hb_185726_010 Hb_185726_010 Hb_001902_040--Hb_185726_010 Hb_010978_020 Hb_010978_020 Hb_001902_040--Hb_010978_020 Hb_005211_210 Hb_005211_210 Hb_005675_070--Hb_005211_210 Hb_158189_010 Hb_158189_010 Hb_005675_070--Hb_158189_010 Hb_005675_070--Hb_008689_010 Hb_001541_210 Hb_001541_210 Hb_005675_070--Hb_001541_210 Hb_003893_130 Hb_003893_130 Hb_005675_070--Hb_003893_130 Hb_009620_110 Hb_009620_110 Hb_009522_010--Hb_009620_110 Hb_020375_010 Hb_020375_010 Hb_009522_010--Hb_020375_010 Hb_002073_270 Hb_002073_270 Hb_009522_010--Hb_002073_270 Hb_009522_010--Hb_185726_010 Hb_009070_020 Hb_009070_020 Hb_009522_010--Hb_009070_020 Hb_147006_010 Hb_147006_010 Hb_009522_010--Hb_147006_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.515457 0.353896 1.70848 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 1.44942

CAGE analysis