Hb_000749_300

Information

Type -
Description -
Location Contig749: 292104-298907
Sequence    

Annotation

kegg
ID pop:POPTR_0001s41420g
description COP1-interacting protein 7
nr
ID XP_011029438.1
description PREDICTED: uncharacterized protein LOC105129180 [Populus euphratica]
swissprot
ID -
description -
trembl
ID A0A067JT04
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20957 PE=4 SV=1
Gene Ontology
ID GO:0046148
description cop1-interacting protein 7

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56813: 292113-298539 , PASA_asmbl_56814: 297783-298082
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000749_300 0.0 - - PREDICTED: uncharacterized protein LOC105129180 [Populus euphratica]
2 Hb_001902_040 0.0582527924 - - conserved hypothetical protein [Ricinus communis]
3 Hb_002986_030 0.0632863486 - - hypothetical protein JCGZ_12380 [Jatropha curcas]
4 Hb_000083_210 0.0690317975 - - Major facilitator superfamily protein, putative [Theobroma cacao]
5 Hb_185726_010 0.0728071947 - - anthocyanidin 3-O-glucosyltransferase [Hevea brasiliensis]
6 Hb_000462_010 0.0818452057 - - hypothetical protein VITISV_041696 [Vitis vinifera]
7 Hb_015934_090 0.0868365392 - - PREDICTED: uncharacterized protein LOC105640158 [Jatropha curcas]
8 Hb_001500_130 0.0868864441 - - interferon-induced GTP-binding protein mx, putative [Ricinus communis]
9 Hb_005010_030 0.0884421306 - - PREDICTED: lecithin-cholesterol acyltransferase-like 1 [Jatropha curcas]
10 Hb_003032_030 0.0930189433 transcription factor TF Family: G2-like PREDICTED: uncharacterized protein LOC105639296 isoform X1 [Jatropha curcas]
11 Hb_009620_110 0.0939818149 - - -
12 Hb_001433_090 0.094688447 - - Pectinesterase PPE8B precursor, putative [Ricinus communis]
13 Hb_005843_010 0.0955473374 - - PREDICTED: calmodulin-like protein 1 [Jatropha curcas]
14 Hb_005183_050 0.1003857767 - - hypothetical protein RCOM_1590900 [Ricinus communis]
15 Hb_001557_010 0.101425936 - - PREDICTED: extensin [Jatropha curcas]
16 Hb_000620_040 0.1017259236 transcription factor TF Family: G2-like transcription factor, putative [Ricinus communis]
17 Hb_009522_010 0.1021767321 - - hypothetical protein POPTR_0006s18790g [Populus trichocarpa]
18 Hb_005678_020 0.1027485222 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
19 Hb_020375_010 0.1029584812 - - PREDICTED: transcription factor IBH1 [Jatropha curcas]
20 Hb_010589_010 0.1039026242 - - PREDICTED: classical arabinogalactan protein 9-like [Jatropha curcas]

Gene co-expression network

sample Hb_000749_300 Hb_000749_300 Hb_001902_040 Hb_001902_040 Hb_000749_300--Hb_001902_040 Hb_002986_030 Hb_002986_030 Hb_000749_300--Hb_002986_030 Hb_000083_210 Hb_000083_210 Hb_000749_300--Hb_000083_210 Hb_185726_010 Hb_185726_010 Hb_000749_300--Hb_185726_010 Hb_000462_010 Hb_000462_010 Hb_000749_300--Hb_000462_010 Hb_015934_090 Hb_015934_090 Hb_000749_300--Hb_015934_090 Hb_001902_040--Hb_002986_030 Hb_008689_010 Hb_008689_010 Hb_001902_040--Hb_008689_010 Hb_001902_040--Hb_015934_090 Hb_001902_040--Hb_185726_010 Hb_010978_020 Hb_010978_020 Hb_001902_040--Hb_010978_020 Hb_002986_030--Hb_010978_020 Hb_002986_030--Hb_015934_090 Hb_003032_030 Hb_003032_030 Hb_002986_030--Hb_003032_030 Hb_001206_100 Hb_001206_100 Hb_002986_030--Hb_001206_100 Hb_001500_130 Hb_001500_130 Hb_000083_210--Hb_001500_130 Hb_005010_030 Hb_005010_030 Hb_000083_210--Hb_005010_030 Hb_002246_030 Hb_002246_030 Hb_000083_210--Hb_002246_030 Hb_001047_210 Hb_001047_210 Hb_000083_210--Hb_001047_210 Hb_001433_090 Hb_001433_090 Hb_000083_210--Hb_001433_090 Hb_009620_110 Hb_009620_110 Hb_185726_010--Hb_009620_110 Hb_001766_130 Hb_001766_130 Hb_185726_010--Hb_001766_130 Hb_009522_010 Hb_009522_010 Hb_185726_010--Hb_009522_010 Hb_185726_010--Hb_000462_010 Hb_005678_020 Hb_005678_020 Hb_000462_010--Hb_005678_020 Hb_000462_010--Hb_005010_030 Hb_009315_010 Hb_009315_010 Hb_000462_010--Hb_009315_010 Hb_005843_010 Hb_005843_010 Hb_000462_010--Hb_005843_010 Hb_001711_140 Hb_001711_140 Hb_000462_010--Hb_001711_140 Hb_036790_110 Hb_036790_110 Hb_000462_010--Hb_036790_110 Hb_000620_040 Hb_000620_040 Hb_015934_090--Hb_000620_040 Hb_015934_090--Hb_003032_030 Hb_147006_010 Hb_147006_010 Hb_015934_090--Hb_147006_010 Hb_163950_050 Hb_163950_050 Hb_015934_090--Hb_163950_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0583071 16.9461 33.6247 87.8031 0.0652943 0.150005
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.135113 0.0817925 0.094299 0.780611 91.1043

CAGE analysis