Hb_005010_030

Information

Type -
Description -
Location Contig5010: 49477-51280
Sequence    

Annotation

kegg
ID rcu:RCOM_1586750
description 1-O-acylceramide synthase precursor, putative (EC:2.3.1.43)
nr
ID XP_012068188.1
description PREDICTED: lecithin-cholesterol acyltransferase-like 1 [Jatropha curcas]
swissprot
ID Q9FZI8
description Lecithin-cholesterol acyltransferase-like 1 OS=Arabidopsis thaliana GN=LCAT1 PE=2 SV=1
trembl
ID A0A067KZI6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16004 PE=4 SV=1
Gene Ontology
ID GO:0005774
description lecithin-cholesterol acyltransferase-like 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45848: 49640-51209
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005010_030 0.0 - - PREDICTED: lecithin-cholesterol acyltransferase-like 1 [Jatropha curcas]
2 Hb_001711_140 0.0553794919 - - Endo-1,4-beta-xylanase C precursor, putative [Ricinus communis]
3 Hb_002477_190 0.0571246002 - - hypothetical protein EUGRSUZ_C03380, partial [Eucalyptus grandis]
4 Hb_000462_010 0.0586992182 - - hypothetical protein VITISV_041696 [Vitis vinifera]
5 Hb_006615_090 0.0679187978 - - Flavonol 4'-sulfotransferase, putative [Ricinus communis]
6 Hb_005678_020 0.0689461118 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
7 Hb_005843_010 0.0718487962 - - PREDICTED: calmodulin-like protein 1 [Jatropha curcas]
8 Hb_001047_210 0.0739979632 - - PSI reaction center subunit II [Citrus sinensis]
9 Hb_001433_090 0.0740471347 - - Pectinesterase PPE8B precursor, putative [Ricinus communis]
10 Hb_001500_130 0.0789154796 - - interferon-induced GTP-binding protein mx, putative [Ricinus communis]
11 Hb_026549_060 0.0793248577 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
12 Hb_009315_010 0.0806791465 - - hypothetical protein POPTR_1763s00200g, partial [Populus trichocarpa]
13 Hb_000958_090 0.0835998881 - - PREDICTED: cation/H(+) antiporter 28 [Jatropha curcas]
14 Hb_001199_110 0.0848036938 - - PREDICTED: uncharacterized protein ycf36 isoform X1 [Jatropha curcas]
15 Hb_000083_210 0.0852638313 - - Major facilitator superfamily protein, putative [Theobroma cacao]
16 Hb_000749_300 0.0884421306 - - PREDICTED: uncharacterized protein LOC105129180 [Populus euphratica]
17 Hb_000002_110 0.0920466487 - - hypothetical protein EUGRSUZ_B02140 [Eucalyptus grandis]
18 Hb_020956_030 0.0932930169 - - PREDICTED: swi5-dependent recombination DNA repair protein 1 homolog [Jatropha curcas]
19 Hb_003162_060 0.0941784214 - - PREDICTED: MATH domain-containing protein At5g43560-like [Jatropha curcas]
20 Hb_010589_010 0.0962921313 - - PREDICTED: classical arabinogalactan protein 9-like [Jatropha curcas]

Gene co-expression network

sample Hb_005010_030 Hb_005010_030 Hb_001711_140 Hb_001711_140 Hb_005010_030--Hb_001711_140 Hb_002477_190 Hb_002477_190 Hb_005010_030--Hb_002477_190 Hb_000462_010 Hb_000462_010 Hb_005010_030--Hb_000462_010 Hb_006615_090 Hb_006615_090 Hb_005010_030--Hb_006615_090 Hb_005678_020 Hb_005678_020 Hb_005010_030--Hb_005678_020 Hb_005843_010 Hb_005843_010 Hb_005010_030--Hb_005843_010 Hb_001711_140--Hb_002477_190 Hb_009315_010 Hb_009315_010 Hb_001711_140--Hb_009315_010 Hb_029587_010 Hb_029587_010 Hb_001711_140--Hb_029587_010 Hb_001711_140--Hb_000462_010 Hb_001711_140--Hb_005843_010 Hb_002477_190--Hb_006615_090 Hb_002477_190--Hb_029587_010 Hb_001199_110 Hb_001199_110 Hb_002477_190--Hb_001199_110 Hb_144550_010 Hb_144550_010 Hb_002477_190--Hb_144550_010 Hb_000462_010--Hb_005678_020 Hb_000462_010--Hb_009315_010 Hb_000462_010--Hb_005843_010 Hb_036790_110 Hb_036790_110 Hb_000462_010--Hb_036790_110 Hb_006615_090--Hb_001199_110 Hb_001047_210 Hb_001047_210 Hb_006615_090--Hb_001047_210 Hb_001141_100 Hb_001141_100 Hb_006615_090--Hb_001141_100 Hb_008847_050 Hb_008847_050 Hb_006615_090--Hb_008847_050 Hb_005678_020--Hb_005843_010 Hb_005678_020--Hb_009315_010 Hb_005678_020--Hb_036790_110 Hb_000708_020 Hb_000708_020 Hb_005678_020--Hb_000708_020 Hb_005843_010--Hb_009315_010 Hb_005843_010--Hb_000708_020 Hb_005066_040 Hb_005066_040 Hb_005843_010--Hb_005066_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 5.24829 17.3055 32.3676 0.0118785 0.0116436
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0400683 0.126907 48.4288

CAGE analysis