Hb_002477_190

Information

Type -
Description -
Location Contig2477: 132992-135137
Sequence    

Annotation

kegg
ID pmum:103331376
description uncharacterized LOC103331376
nr
ID KCW82010.1
description hypothetical protein EUGRSUZ_C03380, partial [Eucalyptus grandis]
swissprot
ID -
description -
trembl
ID A0A059CVP5
description Uncharacterized protein (Fragment) OS=Eucalyptus grandis GN=EUGRSUZ_C03380 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25795: 134863-138106 , PASA_asmbl_25796: 134863-138106
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002477_190 0.0 - - hypothetical protein EUGRSUZ_C03380, partial [Eucalyptus grandis]
2 Hb_001711_140 0.0412587591 - - Endo-1,4-beta-xylanase C precursor, putative [Ricinus communis]
3 Hb_005010_030 0.0571246002 - - PREDICTED: lecithin-cholesterol acyltransferase-like 1 [Jatropha curcas]
4 Hb_006615_090 0.0578519574 - - Flavonol 4'-sulfotransferase, putative [Ricinus communis]
5 Hb_029587_010 0.067489934 - - G-type lectin S-receptor-like serine/threonine-protein kinase [Glycine soja]
6 Hb_001199_110 0.0730762606 - - PREDICTED: uncharacterized protein ycf36 isoform X1 [Jatropha curcas]
7 Hb_144550_010 0.0781804032 - - PREDICTED: putative UDP-rhamnose:rhamnosyltransferase 1 [Jatropha curcas]
8 Hb_000917_300 0.0783317344 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH30-like [Populus euphratica]
9 Hb_010589_010 0.080610641 - - PREDICTED: classical arabinogalactan protein 9-like [Jatropha curcas]
10 Hb_001433_090 0.0812063283 - - Pectinesterase PPE8B precursor, putative [Ricinus communis]
11 Hb_000002_110 0.0849201568 - - hypothetical protein EUGRSUZ_B02140 [Eucalyptus grandis]
12 Hb_001500_130 0.0850106316 - - interferon-induced GTP-binding protein mx, putative [Ricinus communis]
13 Hb_000462_010 0.0915960163 - - hypothetical protein VITISV_041696 [Vitis vinifera]
14 Hb_012098_120 0.0935399207 - - PREDICTED: putative elongation of fatty acids protein DDB_G0272012 [Jatropha curcas]
15 Hb_095744_010 0.0947875937 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD1-1 [Fragaria vesca subsp. vesca]
16 Hb_009315_010 0.0957317224 - - hypothetical protein POPTR_1763s00200g, partial [Populus trichocarpa]
17 Hb_020956_030 0.0972894421 - - PREDICTED: swi5-dependent recombination DNA repair protein 1 homolog [Jatropha curcas]
18 Hb_003162_060 0.0997438778 - - PREDICTED: MATH domain-containing protein At5g43560-like [Jatropha curcas]
19 Hb_132880_010 0.1004083726 - - PREDICTED: uncharacterized protein LOC105641595 [Jatropha curcas]
20 Hb_000803_080 0.1031497574 desease resistance Gene Name: ABC_tran ATP-binding cassette transporter, putative [Ricinus communis]

Gene co-expression network

sample Hb_002477_190 Hb_002477_190 Hb_001711_140 Hb_001711_140 Hb_002477_190--Hb_001711_140 Hb_005010_030 Hb_005010_030 Hb_002477_190--Hb_005010_030 Hb_006615_090 Hb_006615_090 Hb_002477_190--Hb_006615_090 Hb_029587_010 Hb_029587_010 Hb_002477_190--Hb_029587_010 Hb_001199_110 Hb_001199_110 Hb_002477_190--Hb_001199_110 Hb_144550_010 Hb_144550_010 Hb_002477_190--Hb_144550_010 Hb_001711_140--Hb_005010_030 Hb_009315_010 Hb_009315_010 Hb_001711_140--Hb_009315_010 Hb_001711_140--Hb_029587_010 Hb_000462_010 Hb_000462_010 Hb_001711_140--Hb_000462_010 Hb_005843_010 Hb_005843_010 Hb_001711_140--Hb_005843_010 Hb_005010_030--Hb_000462_010 Hb_005010_030--Hb_006615_090 Hb_005678_020 Hb_005678_020 Hb_005010_030--Hb_005678_020 Hb_005010_030--Hb_005843_010 Hb_006615_090--Hb_001199_110 Hb_001047_210 Hb_001047_210 Hb_006615_090--Hb_001047_210 Hb_001141_100 Hb_001141_100 Hb_006615_090--Hb_001141_100 Hb_008847_050 Hb_008847_050 Hb_006615_090--Hb_008847_050 Hb_010589_010 Hb_010589_010 Hb_029587_010--Hb_010589_010 Hb_003549_100 Hb_003549_100 Hb_029587_010--Hb_003549_100 Hb_029587_010--Hb_144550_010 Hb_001397_020 Hb_001397_020 Hb_029587_010--Hb_001397_020 Hb_000803_080 Hb_000803_080 Hb_001199_110--Hb_000803_080 Hb_001199_110--Hb_001141_100 Hb_147028_010 Hb_147028_010 Hb_001199_110--Hb_147028_010 Hb_001158_130 Hb_001158_130 Hb_001199_110--Hb_001158_130 Hb_132880_010 Hb_132880_010 Hb_144550_010--Hb_132880_010 Hb_001472_150 Hb_001472_150 Hb_144550_010--Hb_001472_150 Hb_001593_040 Hb_001593_040 Hb_144550_010--Hb_001593_040 Hb_095744_010 Hb_095744_010 Hb_144550_010--Hb_095744_010 Hb_064445_020 Hb_064445_020 Hb_144550_010--Hb_064445_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.041559 0.238407 0.472373 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.682105

CAGE analysis