Hb_000803_080

Information

Type desease resistance
Description Gene Name: ABC_tran
Location Contig803: 134649-139892
Sequence    

Annotation

kegg
ID rcu:RCOM_1578670
description ATP-binding cassette transporter, putative (EC:3.6.3.28)
nr
ID XP_002513520.1
description ATP-binding cassette transporter, putative [Ricinus communis]
swissprot
ID Q8RWI9
description ABC transporter G family member 15 OS=Arabidopsis thaliana GN=ABCG15 PE=2 SV=2
trembl
ID B9RIF1
description ATP-binding cassette transporter, putative OS=Ricinus communis GN=RCOM_1578670 PE=3 SV=1
Gene Ontology
ID GO:0016020
description abc transporter g family member 15-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58881: 134658-136925
cDNA
(Sanger)
(ID:Location)		 001_H14.ab1: 135136-136925 , 011_K07.ab1: 135131-136925 , 013_B14.ab1: 135901-136925 , 039_P03.ab1: 135732-136925 , 047_F01.ab1: 135134-136925 , 047_G05.ab1: 135175-136925

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000803_080 0.0 desease resistance Gene Name: ABC_tran ATP-binding cassette transporter, putative [Ricinus communis]
2 Hb_003913_120 0.0561295675 transcription factor TF Family: MYB hypothetical protein POPTR_0015s09430g [Populus trichocarpa]
3 Hb_004807_010 0.0628365595 - - PREDICTED: auxin-induced protein 15A-like [Jatropha curcas]
4 Hb_028491_010 0.0642795947 - - hypothetical protein JCGZ_12857 [Jatropha curcas]
5 Hb_004607_110 0.0654859463 - - PREDICTED: serine/threonine-protein kinase Nek6 [Jatropha curcas]
6 Hb_147028_010 0.0659922802 transcription factor TF Family: HB PREDICTED: homeobox protein HD1 [Prunus mume]
7 Hb_012098_120 0.0690582329 - - PREDICTED: putative elongation of fatty acids protein DDB_G0272012 [Jatropha curcas]
8 Hb_166718_010 0.0692023704 - - heat-shock protein, putative [Ricinus communis]
9 Hb_001199_110 0.0736483254 - - PREDICTED: uncharacterized protein ycf36 isoform X1 [Jatropha curcas]
10 Hb_001141_100 0.0762622903 - - PREDICTED: type I inositol 1,4,5-trisphosphate 5-phosphatase CVP2-like [Jatropha curcas]
11 Hb_000318_310 0.0792765825 - - hypothetical protein POPTR_0009s11190g [Populus trichocarpa]
12 Hb_185811_010 0.0794677744 - - Flavonol 4'-sulfotransferase, putative [Ricinus communis]
13 Hb_005839_040 0.0808737148 - - hypothetical protein POPTR_0019s08420g [Populus trichocarpa]
14 Hb_008195_090 0.0818855076 - - conserved hypothetical protein [Ricinus communis]
15 Hb_002600_170 0.0824358286 - - conserved hypothetical protein [Ricinus communis]
16 Hb_029991_010 0.0832737999 - - hypothetical protein PRUPE_ppa001615mg [Prunus persica]
17 Hb_006831_090 0.0833703436 - - PREDICTED: uncharacterized protein LOC105642125 isoform X1 [Jatropha curcas]
18 Hb_086300_010 0.0841642203 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
19 Hb_001735_040 0.0845900436 - - PREDICTED: F-box protein SKIP2-like isoform X2 [Populus euphratica]
20 Hb_004032_280 0.0849055957 - - PREDICTED: uncharacterized protein LOC105635149 [Jatropha curcas]

Gene co-expression network

sample Hb_000803_080 Hb_000803_080 Hb_003913_120 Hb_003913_120 Hb_000803_080--Hb_003913_120 Hb_004807_010 Hb_004807_010 Hb_000803_080--Hb_004807_010 Hb_028491_010 Hb_028491_010 Hb_000803_080--Hb_028491_010 Hb_004607_110 Hb_004607_110 Hb_000803_080--Hb_004607_110 Hb_147028_010 Hb_147028_010 Hb_000803_080--Hb_147028_010 Hb_012098_120 Hb_012098_120 Hb_000803_080--Hb_012098_120 Hb_004837_010 Hb_004837_010 Hb_003913_120--Hb_004837_010 Hb_003734_070 Hb_003734_070 Hb_003913_120--Hb_003734_070 Hb_003913_120--Hb_004607_110 Hb_003913_120--Hb_004807_010 Hb_000418_130 Hb_000418_130 Hb_003913_120--Hb_000418_130 Hb_004807_010--Hb_012098_120 Hb_000329_120 Hb_000329_120 Hb_004807_010--Hb_000329_120 Hb_005839_040 Hb_005839_040 Hb_004807_010--Hb_005839_040 Hb_185811_010 Hb_185811_010 Hb_004807_010--Hb_185811_010 Hb_009233_020 Hb_009233_020 Hb_004807_010--Hb_009233_020 Hb_028491_010--Hb_004607_110 Hb_001141_100 Hb_001141_100 Hb_028491_010--Hb_001141_100 Hb_029991_010 Hb_029991_010 Hb_028491_010--Hb_029991_010 Hb_001277_130 Hb_001277_130 Hb_028491_010--Hb_001277_130 Hb_008847_050 Hb_008847_050 Hb_028491_010--Hb_008847_050 Hb_028491_010--Hb_147028_010 Hb_004607_110--Hb_029991_010 Hb_004607_110--Hb_001141_100 Hb_131466_010 Hb_131466_010 Hb_004607_110--Hb_131466_010 Hb_001735_040 Hb_001735_040 Hb_004607_110--Hb_001735_040 Hb_147028_010--Hb_001141_100 Hb_147028_010--Hb_001277_130 Hb_086300_010 Hb_086300_010 Hb_147028_010--Hb_086300_010 Hb_147028_010--Hb_001735_040 Hb_012098_120--Hb_005839_040 Hb_012098_120--Hb_185811_010 Hb_001345_050 Hb_001345_050 Hb_012098_120--Hb_001345_050 Hb_072771_010 Hb_072771_010 Hb_012098_120--Hb_072771_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.305192 7.1154 9.1013 0.0322813 0.0291419
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.018917 0.0148853 0 0.0768793 14.7226

CAGE analysis