Hb_004607_110

Information

Type -
Description -
Location Contig4607: 67069-70925
Sequence    

Annotation

kegg
ID tcc:TCM_040597
description NIMA-related kinase 7
nr
ID XP_012089969.1
description PREDICTED: serine/threonine-protein kinase Nek6 [Jatropha curcas]
swissprot
ID Q6YY75
description Serine/threonine-protein kinase Nek6 OS=Oryza sativa subsp. japonica GN=NEK6 PE=3 SV=2
trembl
ID A0A067JGY6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25899 PE=4 SV=1
Gene Ontology
ID GO:0004672
description serine threonine-protein kinase nek6-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43712: 68011-69238 , PASA_asmbl_43713: 68011-69380 , PASA_asmbl_43714: 69572-70755 , PASA_asmbl_43715: 71007-71114
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004607_110 0.0 - - PREDICTED: serine/threonine-protein kinase Nek6 [Jatropha curcas]
2 Hb_028491_010 0.0382345469 - - hypothetical protein JCGZ_12857 [Jatropha curcas]
3 Hb_029991_010 0.0481957808 - - hypothetical protein PRUPE_ppa001615mg [Prunus persica]
4 Hb_001141_100 0.0590380054 - - PREDICTED: type I inositol 1,4,5-trisphosphate 5-phosphatase CVP2-like [Jatropha curcas]
5 Hb_131466_010 0.0633193746 - - PREDICTED: putative amidase C869.01 [Jatropha curcas]
6 Hb_001735_040 0.0652396599 - - PREDICTED: F-box protein SKIP2-like isoform X2 [Populus euphratica]
7 Hb_000803_080 0.0654859463 desease resistance Gene Name: ABC_tran ATP-binding cassette transporter, putative [Ricinus communis]
8 Hb_009193_070 0.0669014211 - - fatty acid elongase 3-ketoacyl-CoA synthase 1 [Arabidopsis thaliana]
9 Hb_003913_120 0.06854991 transcription factor TF Family: MYB hypothetical protein POPTR_0015s09430g [Populus trichocarpa]
10 Hb_002387_010 0.0706435551 - - PREDICTED: protein STAY-GREEN LIKE, chloroplastic [Jatropha curcas]
11 Hb_008847_050 0.0720490354 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001277_130 0.0725686748 - - PREDICTED: dentin sialophosphoprotein-like [Jatropha curcas]
13 Hb_004338_050 0.0727053908 - - hypothetical protein POPTR_0004s02760g [Populus trichocarpa]
14 Hb_001307_050 0.0733418893 - - PREDICTED: protein NRT1/ PTR FAMILY 5.2-like [Jatropha curcas]
15 Hb_001999_230 0.0752077159 - - PREDICTED: uncharacterized protein LOC105630678 [Jatropha curcas]
16 Hb_000497_050 0.0754641756 - - PREDICTED: photosystem II repair protein PSB27-H1, chloroplastic [Jatropha curcas]
17 Hb_033187_010 0.0779608842 - - epoxide hydrolase, putative [Ricinus communis]
18 Hb_147028_010 0.0787946758 transcription factor TF Family: HB PREDICTED: homeobox protein HD1 [Prunus mume]
19 Hb_002805_280 0.0820125416 - - PREDICTED: sugar transport protein 14-like [Jatropha curcas]
20 Hb_008195_090 0.0823672381 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_004607_110 Hb_004607_110 Hb_028491_010 Hb_028491_010 Hb_004607_110--Hb_028491_010 Hb_029991_010 Hb_029991_010 Hb_004607_110--Hb_029991_010 Hb_001141_100 Hb_001141_100 Hb_004607_110--Hb_001141_100 Hb_131466_010 Hb_131466_010 Hb_004607_110--Hb_131466_010 Hb_001735_040 Hb_001735_040 Hb_004607_110--Hb_001735_040 Hb_000803_080 Hb_000803_080 Hb_004607_110--Hb_000803_080 Hb_028491_010--Hb_001141_100 Hb_028491_010--Hb_029991_010 Hb_001277_130 Hb_001277_130 Hb_028491_010--Hb_001277_130 Hb_008847_050 Hb_008847_050 Hb_028491_010--Hb_008847_050 Hb_147028_010 Hb_147028_010 Hb_028491_010--Hb_147028_010 Hb_029991_010--Hb_131466_010 Hb_001307_050 Hb_001307_050 Hb_029991_010--Hb_001307_050 Hb_000179_010 Hb_000179_010 Hb_029991_010--Hb_000179_010 Hb_000497_050 Hb_000497_050 Hb_029991_010--Hb_000497_050 Hb_001141_100--Hb_008847_050 Hb_001141_100--Hb_147028_010 Hb_001141_100--Hb_001277_130 Hb_009193_070 Hb_009193_070 Hb_001141_100--Hb_009193_070 Hb_006291_050 Hb_006291_050 Hb_131466_010--Hb_006291_050 Hb_131466_010--Hb_009193_070 Hb_002042_210 Hb_002042_210 Hb_131466_010--Hb_002042_210 Hb_131466_010--Hb_028491_010 Hb_007537_040 Hb_007537_040 Hb_001735_040--Hb_007537_040 Hb_001735_040--Hb_028491_010 Hb_000418_130 Hb_000418_130 Hb_001735_040--Hb_000418_130 Hb_008225_050 Hb_008225_050 Hb_001735_040--Hb_008225_050 Hb_001735_040--Hb_029991_010 Hb_003913_120 Hb_003913_120 Hb_000803_080--Hb_003913_120 Hb_004807_010 Hb_004807_010 Hb_000803_080--Hb_004807_010 Hb_000803_080--Hb_028491_010 Hb_000803_080--Hb_147028_010 Hb_012098_120 Hb_012098_120 Hb_000803_080--Hb_012098_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.498971 7.08154 7.58359 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0534799 0 0.134757 15.7838

CAGE analysis