Hb_006291_050

Information

Type -
Description -
Location Contig6291: 87617-92599
Sequence    

Annotation

kegg
ID tcc:TCM_020171
description Nucleic acid-binding proteins superfamily isoform 1
nr
ID XP_012078423.1
description PREDICTED: polyribonucleotide nucleotidyltransferase 2, mitochondrial isoform X1 [Jatropha curcas]
swissprot
ID P29344
description 30S ribosomal protein S1, chloroplastic OS=Spinacia oleracea GN=RPS1 PE=1 SV=1
trembl
ID A0A067KJX4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13115 PE=4 SV=1
Gene Ontology
ID GO:0009507
description nucleic acid-binding proteins superfamily isoform 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51782: 87623-92325 , PASA_asmbl_51783: 89433-92558
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006291_050 0.0 - - PREDICTED: polyribonucleotide nucleotidyltransferase 2, mitochondrial isoform X1 [Jatropha curcas]
2 Hb_005111_040 0.0504752629 - - glucose-6-phosphate dehydrogenase [Hevea brasiliensis]
3 Hb_131466_010 0.0516665117 - - PREDICTED: putative amidase C869.01 [Jatropha curcas]
4 Hb_009193_070 0.0607397382 - - fatty acid elongase 3-ketoacyl-CoA synthase 1 [Arabidopsis thaliana]
5 Hb_002042_210 0.0680069142 - - PREDICTED: UPF0603 protein At1g54780, chloroplastic [Jatropha curcas]
6 Hb_006573_240 0.0745301702 - - PREDICTED: anthocyanidin 5,3-O-glucosyltransferase-like [Jatropha curcas]
7 Hb_044478_010 0.0775795664 - - plastoquinol-plastocyanin reductase, putative [Ricinus communis]
8 Hb_001007_070 0.0818773191 - - thioredoxin m(mitochondrial)-type, putative [Ricinus communis]
9 Hb_001699_110 0.0821576533 - - PREDICTED: pathogenesis-related protein 5-like [Jatropha curcas]
10 Hb_029991_010 0.0825313853 - - hypothetical protein PRUPE_ppa001615mg [Prunus persica]
11 Hb_008195_090 0.082956203 - - conserved hypothetical protein [Ricinus communis]
12 Hb_028491_010 0.0841531062 - - hypothetical protein JCGZ_12857 [Jatropha curcas]
13 Hb_004607_110 0.0847408345 - - PREDICTED: serine/threonine-protein kinase Nek6 [Jatropha curcas]
14 Hb_000482_180 0.0851874646 - - PREDICTED: glycine dehydrogenase (decarboxylating), mitochondrial [Jatropha curcas]
15 Hb_001999_230 0.0857923496 - - PREDICTED: uncharacterized protein LOC105630678 [Jatropha curcas]
16 Hb_003925_120 0.0858946785 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_26658 [Jatropha curcas]
17 Hb_000307_100 0.087471553 - - Plastocyanin A, chloroplast precursor, putative [Ricinus communis]
18 Hb_002805_280 0.0886061642 - - PREDICTED: sugar transport protein 14-like [Jatropha curcas]
19 Hb_004128_170 0.0899924624 - - hypothetical protein POPTR_0016s08350g [Populus trichocarpa]
20 Hb_000329_430 0.0905623783 transcription factor TF Family: bHLH PREDICTED: transcription factor UNE10 [Jatropha curcas]

Gene co-expression network

sample Hb_006291_050 Hb_006291_050 Hb_005111_040 Hb_005111_040 Hb_006291_050--Hb_005111_040 Hb_131466_010 Hb_131466_010 Hb_006291_050--Hb_131466_010 Hb_009193_070 Hb_009193_070 Hb_006291_050--Hb_009193_070 Hb_002042_210 Hb_002042_210 Hb_006291_050--Hb_002042_210 Hb_006573_240 Hb_006573_240 Hb_006291_050--Hb_006573_240 Hb_044478_010 Hb_044478_010 Hb_006291_050--Hb_044478_010 Hb_000482_180 Hb_000482_180 Hb_005111_040--Hb_000482_180 Hb_001007_070 Hb_001007_070 Hb_005111_040--Hb_001007_070 Hb_005111_040--Hb_009193_070 Hb_005111_040--Hb_131466_010 Hb_005111_040--Hb_044478_010 Hb_029991_010 Hb_029991_010 Hb_131466_010--Hb_029991_010 Hb_131466_010--Hb_009193_070 Hb_004607_110 Hb_004607_110 Hb_131466_010--Hb_004607_110 Hb_131466_010--Hb_002042_210 Hb_028491_010 Hb_028491_010 Hb_131466_010--Hb_028491_010 Hb_003925_120 Hb_003925_120 Hb_009193_070--Hb_003925_120 Hb_008847_050 Hb_008847_050 Hb_009193_070--Hb_008847_050 Hb_009193_070--Hb_001007_070 Hb_009193_070--Hb_028491_010 Hb_001999_230 Hb_001999_230 Hb_009193_070--Hb_001999_230 Hb_002042_210--Hb_044478_010 Hb_002805_280 Hb_002805_280 Hb_002042_210--Hb_002805_280 Hb_003033_020 Hb_003033_020 Hb_002042_210--Hb_003033_020 Hb_002042_210--Hb_005111_040 Hb_006573_240--Hb_003033_020 Hb_003787_030 Hb_003787_030 Hb_006573_240--Hb_003787_030 Hb_000928_260 Hb_000928_260 Hb_006573_240--Hb_000928_260 Hb_002301_070 Hb_002301_070 Hb_006573_240--Hb_002301_070 Hb_002329_050 Hb_002329_050 Hb_006573_240--Hb_002329_050 Hb_000307_100 Hb_000307_100 Hb_006573_240--Hb_000307_100 Hb_153258_040 Hb_153258_040 Hb_044478_010--Hb_153258_040 Hb_044478_010--Hb_131466_010 Hb_001946_120 Hb_001946_120 Hb_044478_010--Hb_001946_120 Hb_044478_010--Hb_001999_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0351666 2.36033 17.0072 19.7171 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0644362 0 0 1.06272 52.9123

CAGE analysis