Hb_153258_040

Information

Type -
Description -
Location Contig153258: 32161-34892
Sequence    

Annotation

kegg
ID rcu:RCOM_0853040
description type I inositol polyphosphate 5-phosphatase, putative (EC:3.1.3.56)
nr
ID XP_012082502.1
description PREDICTED: type I inositol 1,4,5-trisphosphate 5-phosphatase CVP2-like [Jatropha curcas]
swissprot
ID Q9LR47
description Type I inositol 1,4,5-trisphosphate 5-phosphatase CVP2 OS=Arabidopsis thaliana GN=CVP2 PE=1 SV=2
trembl
ID A0A067LAE2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09680 PE=4 SV=1
Gene Ontology
ID GO:0046856
description type i inositol -trisphosphate 5-phosphatase cvp2-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13179: 31803-35081 , PASA_asmbl_13180: 31803-35081
cDNA
(Sanger)
(ID:Location)		 005_M21.ab1: 31803-32748 , 044_E21.ab1: 31803-32970

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_153258_040 0.0 - - PREDICTED: type I inositol 1,4,5-trisphosphate 5-phosphatase CVP2-like [Jatropha curcas]
2 Hb_001946_120 0.0644549651 - - PREDICTED: SPX domain-containing protein 1-like [Jatropha curcas]
3 Hb_044478_010 0.0646110184 - - plastoquinol-plastocyanin reductase, putative [Ricinus communis]
4 Hb_004970_060 0.0668236773 - - PREDICTED: uncharacterized protein LOC100259061 [Vitis vinifera]
5 Hb_003777_080 0.0674453751 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-2-like [Populus euphratica]
6 Hb_001999_230 0.0699793992 - - PREDICTED: uncharacterized protein LOC105630678 [Jatropha curcas]
7 Hb_006970_030 0.0715128436 - - synaptotagmin, putative [Ricinus communis]
8 Hb_000254_130 0.0748047087 - - Photosystem I reaction center subunit VI, chloroplast precursor, putative [Ricinus communis]
9 Hb_001564_120 0.0768029857 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP26-2, chloroplastic [Populus euphratica]
10 Hb_087599_010 0.0799081317 - - PREDICTED: tropinone reductase homolog [Solanum tuberosum]
11 Hb_011214_130 0.0802090651 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 86 [Jatropha curcas]
12 Hb_000099_120 0.080211693 - - PREDICTED: GDT1-like protein 1, chloroplastic isoform X3 [Jatropha curcas]
13 Hb_005694_120 0.0832412514 - - PREDICTED: calcium-transporting ATPase, endoplasmic reticulum-type [Jatropha curcas]
14 Hb_005111_040 0.083620522 - - glucose-6-phosphate dehydrogenase [Hevea brasiliensis]
15 Hb_001007_070 0.0836241334 - - thioredoxin m(mitochondrial)-type, putative [Ricinus communis]
16 Hb_005063_030 0.0846641589 - - Photosystem II reaction center W protein, chloroplast precursor, putative [Ricinus communis]
17 Hb_000392_470 0.0862484897 - - conserved hypothetical protein [Ricinus communis]
18 Hb_003025_160 0.0869545337 - - Protein HVA22, putative [Ricinus communis]
19 Hb_000049_100 0.0870302044 - - Photosystem II reaction center W protein, putative [Ricinus communis]
20 Hb_156093_010 0.0871084789 - - hypothetical protein RCOM_0504250 [Ricinus communis]

Gene co-expression network

sample Hb_153258_040 Hb_153258_040 Hb_001946_120 Hb_001946_120 Hb_153258_040--Hb_001946_120 Hb_044478_010 Hb_044478_010 Hb_153258_040--Hb_044478_010 Hb_004970_060 Hb_004970_060 Hb_153258_040--Hb_004970_060 Hb_003777_080 Hb_003777_080 Hb_153258_040--Hb_003777_080 Hb_001999_230 Hb_001999_230 Hb_153258_040--Hb_001999_230 Hb_006970_030 Hb_006970_030 Hb_153258_040--Hb_006970_030 Hb_005694_120 Hb_005694_120 Hb_001946_120--Hb_005694_120 Hb_001007_070 Hb_001007_070 Hb_001946_120--Hb_001007_070 Hb_001946_120--Hb_044478_010 Hb_000984_160 Hb_000984_160 Hb_001946_120--Hb_000984_160 Hb_000099_120 Hb_000099_120 Hb_001946_120--Hb_000099_120 Hb_002042_210 Hb_002042_210 Hb_044478_010--Hb_002042_210 Hb_131466_010 Hb_131466_010 Hb_044478_010--Hb_131466_010 Hb_005111_040 Hb_005111_040 Hb_044478_010--Hb_005111_040 Hb_044478_010--Hb_001999_230 Hb_003025_160 Hb_003025_160 Hb_004970_060--Hb_003025_160 Hb_008225_050 Hb_008225_050 Hb_004970_060--Hb_008225_050 Hb_007537_040 Hb_007537_040 Hb_004970_060--Hb_007537_040 Hb_000254_130 Hb_000254_130 Hb_004970_060--Hb_000254_130 Hb_004970_060--Hb_001999_230 Hb_087599_010 Hb_087599_010 Hb_003777_080--Hb_087599_010 Hb_001975_100 Hb_001975_100 Hb_003777_080--Hb_001975_100 Hb_005063_030 Hb_005063_030 Hb_003777_080--Hb_005063_030 Hb_003777_080--Hb_004970_060 Hb_156093_010 Hb_156093_010 Hb_003777_080--Hb_156093_010 Hb_001999_230--Hb_001007_070 Hb_001999_230--Hb_000254_130 Hb_001999_230--Hb_000099_120 Hb_000497_050 Hb_000497_050 Hb_001999_230--Hb_000497_050 Hb_001564_120 Hb_001564_120 Hb_001999_230--Hb_001564_120 Hb_001999_230--Hb_001975_100 Hb_006970_030--Hb_003777_080 Hb_000140_460 Hb_000140_460 Hb_006970_030--Hb_000140_460 Hb_006970_030--Hb_004970_060 Hb_000950_020 Hb_000950_020 Hb_006970_030--Hb_000950_020 Hb_000049_100 Hb_000049_100 Hb_006970_030--Hb_000049_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.478009 4.99638 3.07121 0.0120657 0.025587
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0293376 0.0461627 0 0.432706 9.87237

CAGE analysis