Hb_000950_020

Information

Type -
Description -
Location Contig950: 39062-43864
Sequence    

Annotation

kegg
ID rcu:RCOM_0424630
description glycerol-3-phosphate dehydrogenase, putative (EC:1.1.1.94)
nr
ID XP_012086218.1
description PREDICTED: glycerol-3-phosphate dehydrogenase [NAD(+)] GPDHC1, cytosolic [Jatropha curcas]
swissprot
ID Q8S0G4
description Probable glycerol-3-phosphate dehydrogenase [NAD(+)] 1, cytosolic OS=Oryza sativa subsp. japonica GN=Os01g0939600 PE=2 SV=1
trembl
ID A0A067K2R6
description Glycerol-3-phosphate dehydrogenase [NAD(+)] OS=Jatropha curcas GN=JCGZ_21122 PE=3 SV=1
Gene Ontology
ID GO:0009331
description glycerol-3-phosphate dehydrogenase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63393: 40540-41535 , PASA_asmbl_63394: 43747-43896
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000950_020 0.0 - - PREDICTED: glycerol-3-phosphate dehydrogenase [NAD(+)] GPDHC1, cytosolic [Jatropha curcas]
2 Hb_004920_020 0.0856192126 - - hypothetical protein POPTR_0014s11700g [Populus trichocarpa]
3 Hb_006970_030 0.086297893 - - synaptotagmin, putative [Ricinus communis]
4 Hb_000711_030 0.0944055364 - - hypothetical protein POPTR_0019s02860g [Populus trichocarpa]
5 Hb_002235_070 0.0966557896 - - PREDICTED: uncharacterized protein LOC105644108 [Jatropha curcas]
6 Hb_001159_070 0.0995523044 - - DNA photolyase, putative [Ricinus communis]
7 Hb_000544_070 0.1026144646 - - Peptidyl-prolyl cis-trans isomerase FKBP17-2 [Morus notabilis]
8 Hb_003371_010 0.1032429905 - - PREDICTED: putative cell division cycle ATPase [Jatropha curcas]
9 Hb_003120_020 0.1040114289 desease resistance Gene Name: ABC_membrane PREDICTED: ABC transporter B family member 13-like [Prunus mume]
10 Hb_000049_100 0.1049930771 - - Photosystem II reaction center W protein, putative [Ricinus communis]
11 Hb_000190_230 0.1053591861 - - PREDICTED: sulfate transporter 3.1-like [Jatropha curcas]
12 Hb_005000_110 0.1074285106 - - PREDICTED: uncharacterized protein LOC105637872 isoform X1 [Jatropha curcas]
13 Hb_000300_110 0.1087727804 - - hypothetical protein JCGZ_02651 [Jatropha curcas]
14 Hb_000808_130 0.1113781812 - - 3-5 exonuclease, putative [Ricinus communis]
15 Hb_137222_010 0.1115281589 - - PREDICTED: hippocampus abundant transcript-like protein 1 [Jatropha curcas]
16 Hb_002375_030 0.1126720576 - - F-box family protein [Populus trichocarpa]
17 Hb_003777_080 0.1156245743 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-2-like [Populus euphratica]
18 Hb_008195_070 0.1169514475 - - PREDICTED: thylakoid lumenal protein At1g12250, chloroplastic isoform X2 [Jatropha curcas]
19 Hb_000327_260 0.1172156302 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000128_040 0.1179555554 - - PREDICTED: uncharacterized protein LOC105641228 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000950_020 Hb_000950_020 Hb_004920_020 Hb_004920_020 Hb_000950_020--Hb_004920_020 Hb_006970_030 Hb_006970_030 Hb_000950_020--Hb_006970_030 Hb_000711_030 Hb_000711_030 Hb_000950_020--Hb_000711_030 Hb_002235_070 Hb_002235_070 Hb_000950_020--Hb_002235_070 Hb_001159_070 Hb_001159_070 Hb_000950_020--Hb_001159_070 Hb_000544_070 Hb_000544_070 Hb_000950_020--Hb_000544_070 Hb_000128_040 Hb_000128_040 Hb_004920_020--Hb_000128_040 Hb_005000_110 Hb_005000_110 Hb_004920_020--Hb_005000_110 Hb_004920_020--Hb_000544_070 Hb_005211_080 Hb_005211_080 Hb_004920_020--Hb_005211_080 Hb_000300_110 Hb_000300_110 Hb_004920_020--Hb_000300_110 Hb_153258_040 Hb_153258_040 Hb_006970_030--Hb_153258_040 Hb_003777_080 Hb_003777_080 Hb_006970_030--Hb_003777_080 Hb_000140_460 Hb_000140_460 Hb_006970_030--Hb_000140_460 Hb_004970_060 Hb_004970_060 Hb_006970_030--Hb_004970_060 Hb_000049_100 Hb_000049_100 Hb_006970_030--Hb_000049_100 Hb_004650_050 Hb_004650_050 Hb_000711_030--Hb_004650_050 Hb_009838_070 Hb_009838_070 Hb_000711_030--Hb_009838_070 Hb_000711_030--Hb_001159_070 Hb_000327_260 Hb_000327_260 Hb_000711_030--Hb_000327_260 Hb_000711_030--Hb_005000_110 Hb_000190_230 Hb_000190_230 Hb_002235_070--Hb_000190_230 Hb_003602_100 Hb_003602_100 Hb_002235_070--Hb_003602_100 Hb_007803_040 Hb_007803_040 Hb_002235_070--Hb_007803_040 Hb_002235_070--Hb_000049_100 Hb_002235_070--Hb_006970_030 Hb_000392_260 Hb_000392_260 Hb_001159_070--Hb_000392_260 Hb_001159_070--Hb_004920_020 Hb_001159_070--Hb_005000_110 Hb_000948_120 Hb_000948_120 Hb_001159_070--Hb_000948_120 Hb_004306_090 Hb_004306_090 Hb_000544_070--Hb_004306_090 Hb_002485_050 Hb_002485_050 Hb_000544_070--Hb_002485_050 Hb_002609_140 Hb_002609_140 Hb_000544_070--Hb_002609_140 Hb_000544_070--Hb_007803_040 Hb_074548_010 Hb_074548_010 Hb_000544_070--Hb_074548_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.398742 0.725192 14.2811 5.80951 0.142673 0.0599866
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.155805 0.102155 0.154409 1.18013 17.7615

CAGE analysis