Hb_000948_120

Information

Type -
Description -
Location Contig948: 127932-135107
Sequence    

Annotation

kegg
ID rcu:RCOM_0517300
description hypothetical protein
nr
ID XP_012072966.1
description PREDICTED: uncharacterized protein LOC105634688 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KYH0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06754 PE=4 SV=1
Gene Ontology
ID GO:0009535
description thioredoxin family protein isoform 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63317: 127925-135034
cDNA
(Sanger)
(ID:Location)		 019_M06.ab1: 129524-134991 , 027_G08.ab1: 129681-135017 , 027_H08.ab1: 130918-135034 , 032_A20.ab1: 130342-134991 , 045_A17.ab1: 129012-134991

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000948_120 0.0 - - PREDICTED: uncharacterized protein LOC105634688 isoform X1 [Jatropha curcas]
2 Hb_002636_030 0.0932092152 - - hypothetical protein JCGZ_11800 [Jatropha curcas]
3 Hb_121089_010 0.0948292051 - - PREDICTED: uncharacterized protein LOC105645663 [Jatropha curcas]
4 Hb_001227_140 0.103955852 - - PREDICTED: protein ROS1 [Jatropha curcas]
5 Hb_001159_070 0.104055508 - - DNA photolyase, putative [Ricinus communis]
6 Hb_003680_060 0.1045087778 - - hypothetical protein VITISV_022322 [Vitis vinifera]
7 Hb_000140_460 0.1056820739 - - PREDICTED: uncharacterized protein LOC105628417 [Jatropha curcas]
8 Hb_003141_060 0.1060071889 transcription factor TF Family: TRAF PREDICTED: ETO1-like protein 1 [Jatropha curcas]
9 Hb_009393_130 0.1072664026 - - PREDICTED: uncharacterized protein LOC105638053 isoform X4 [Jatropha curcas]
10 Hb_000618_110 0.1103555785 - - hypothetical protein POPTR_0003s09870g [Populus trichocarpa]
11 Hb_000002_300 0.1108707281 - - Desacetoxyvindoline 4-hydroxylase, putative [Ricinus communis]
12 Hb_091433_050 0.1128340494 - - PREDICTED: uncharacterized protein LOC105646626 [Jatropha curcas]
13 Hb_003915_020 0.1158636591 - - PREDICTED: outer envelope pore protein 37, chloroplastic [Jatropha curcas]
14 Hb_000392_260 0.116107373 - - PREDICTED: microtubule-associated protein RP/EB family member 1B [Jatropha curcas]
15 Hb_000679_080 0.1174506947 - - PREDICTED: lactation elevated protein 1 isoform X1 [Jatropha curcas]
16 Hb_003416_020 0.1192135717 - - pentatricopeptide repeat-containing family protein [Populus trichocarpa]
17 Hb_000711_030 0.1200264288 - - hypothetical protein POPTR_0019s02860g [Populus trichocarpa]
18 Hb_004096_210 0.1205845693 - - PREDICTED: uncharacterized protein LOC105638707 isoform X2 [Jatropha curcas]
19 Hb_000684_200 0.1230897145 - - PREDICTED: protein IQ-DOMAIN 1-like [Jatropha curcas]
20 Hb_000120_490 0.1234611022 - - PREDICTED: MORC family CW-type zinc finger protein 3-like [Jatropha curcas]

Gene co-expression network

sample Hb_000948_120 Hb_000948_120 Hb_002636_030 Hb_002636_030 Hb_000948_120--Hb_002636_030 Hb_121089_010 Hb_121089_010 Hb_000948_120--Hb_121089_010 Hb_001227_140 Hb_001227_140 Hb_000948_120--Hb_001227_140 Hb_001159_070 Hb_001159_070 Hb_000948_120--Hb_001159_070 Hb_003680_060 Hb_003680_060 Hb_000948_120--Hb_003680_060 Hb_000140_460 Hb_000140_460 Hb_000948_120--Hb_000140_460 Hb_091433_050 Hb_091433_050 Hb_002636_030--Hb_091433_050 Hb_003605_060 Hb_003605_060 Hb_002636_030--Hb_003605_060 Hb_000856_280 Hb_000856_280 Hb_002636_030--Hb_000856_280 Hb_074548_010 Hb_074548_010 Hb_002636_030--Hb_074548_010 Hb_010098_040 Hb_010098_040 Hb_002636_030--Hb_010098_040 Hb_003915_020 Hb_003915_020 Hb_121089_010--Hb_003915_020 Hb_000120_490 Hb_000120_490 Hb_121089_010--Hb_000120_490 Hb_121089_010--Hb_003680_060 Hb_004102_080 Hb_004102_080 Hb_121089_010--Hb_004102_080 Hb_121089_010--Hb_001227_140 Hb_001227_140--Hb_003915_020 Hb_003141_060 Hb_003141_060 Hb_001227_140--Hb_003141_060 Hb_000940_030 Hb_000940_030 Hb_001227_140--Hb_000940_030 Hb_001365_030 Hb_001365_030 Hb_001227_140--Hb_001365_030 Hb_003055_070 Hb_003055_070 Hb_001227_140--Hb_003055_070 Hb_000392_260 Hb_000392_260 Hb_001159_070--Hb_000392_260 Hb_000711_030 Hb_000711_030 Hb_001159_070--Hb_000711_030 Hb_004920_020 Hb_004920_020 Hb_001159_070--Hb_004920_020 Hb_000950_020 Hb_000950_020 Hb_001159_070--Hb_000950_020 Hb_005000_110 Hb_005000_110 Hb_001159_070--Hb_005000_110 Hb_009393_130 Hb_009393_130 Hb_003680_060--Hb_009393_130 Hb_009838_070 Hb_009838_070 Hb_003680_060--Hb_009838_070 Hb_000116_220 Hb_000116_220 Hb_003680_060--Hb_000116_220 Hb_004650_050 Hb_004650_050 Hb_003680_060--Hb_004650_050 Hb_003680_060--Hb_091433_050 Hb_003680_060--Hb_000711_030 Hb_069696_020 Hb_069696_020 Hb_000140_460--Hb_069696_020 Hb_002073_150 Hb_002073_150 Hb_000140_460--Hb_002073_150 Hb_006970_030 Hb_006970_030 Hb_000140_460--Hb_006970_030 Hb_000618_110 Hb_000618_110 Hb_000140_460--Hb_000618_110 Hb_000984_160 Hb_000984_160 Hb_000140_460--Hb_000984_160 Hb_018591_020 Hb_018591_020 Hb_000140_460--Hb_018591_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.13789 14.4547 73.0665 35.6344 0.795554 1.16131
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.34495 1.27743 2.25305 10.4886 86.996

CAGE analysis