Hb_003680_060

Information

Type -
Description -
Location Contig3680: 51112-58940
Sequence    

Annotation

kegg
ID rcu:RCOM_1351700
description serine-threonine protein kinase, plant-type, putative (EC:2.7.10.2)
nr
ID CAN72920.1
description hypothetical protein VITISV_022322 [Vitis vinifera]
swissprot
ID Q9LZM4
description Wall-associated receptor kinase-like 20 OS=Arabidopsis thaliana GN=WAKL20 PE=2 SV=1
trembl
ID A5C0W3
description Peptidyl-prolyl cis-trans isomerase OS=Vitis vinifera GN=VITISV_022322 PE=4 SV=1
Gene Ontology
ID GO:0003755
description wall-associated receptor kinase-like 20

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37827: 51751-52139 , PASA_asmbl_37828: 53697-58923 , PASA_asmbl_37829: 53580-58885 , PASA_asmbl_37830: 55725-57202
cDNA
(Sanger)
(ID:Location)		 001_O15.ab1: 55725-57202 , 003_C12.ab1: 55733-57202 , 014_N10.ab1: 54012-58885 , 045_H11.ab1: 53929-58885

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003680_060 0.0 - - hypothetical protein VITISV_022322 [Vitis vinifera]
2 Hb_009393_130 0.0775841284 - - PREDICTED: uncharacterized protein LOC105638053 isoform X4 [Jatropha curcas]
3 Hb_009838_070 0.0848151813 - - PREDICTED: 28 kDa ribonucleoprotein, chloroplastic [Jatropha curcas]
4 Hb_000116_220 0.0937326775 - - conserved hypothetical protein [Ricinus communis]
5 Hb_004650_050 0.0956501713 - - PREDICTED: uncharacterized protein At1g04910-like isoform X2 [Jatropha curcas]
6 Hb_091433_050 0.1004166704 - - PREDICTED: uncharacterized protein LOC105646626 [Jatropha curcas]
7 Hb_000711_030 0.101289934 - - hypothetical protein POPTR_0019s02860g [Populus trichocarpa]
8 Hb_000327_260 0.1025026552 - - conserved hypothetical protein [Ricinus communis]
9 Hb_003605_060 0.1028641207 - - PREDICTED: ATP synthase subunit delta, chloroplastic [Jatropha curcas]
10 Hb_000948_120 0.1045087778 - - PREDICTED: uncharacterized protein LOC105634688 isoform X1 [Jatropha curcas]
11 Hb_000134_040 0.1063128375 - - PREDICTED: 30S ribosomal protein 2, chloroplastic [Jatropha curcas]
12 Hb_005000_110 0.1098594978 - - PREDICTED: uncharacterized protein LOC105637872 isoform X1 [Jatropha curcas]
13 Hb_002485_050 0.1107099853 - - PREDICTED: probable plastid-lipid-associated protein 12, chloroplastic [Jatropha curcas]
14 Hb_002495_090 0.110809014 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH48 isoform X2 [Jatropha curcas]
15 Hb_006583_030 0.1108307517 - - PREDICTED: SPX and EXS domain-containing protein 1-like isoform X4 [Jatropha curcas]
16 Hb_000302_230 0.1114033514 - - conserved hypothetical protein [Ricinus communis]
17 Hb_010557_010 0.1171672122 - - PREDICTED: 50S ribosomal protein L3, chloroplastic [Jatropha curcas]
18 Hb_001623_380 0.1176566198 - - PREDICTED: 7-hydroxymethyl chlorophyll a reductase, chloroplastic [Jatropha curcas]
19 Hb_121089_010 0.1179845386 - - PREDICTED: uncharacterized protein LOC105645663 [Jatropha curcas]
20 Hb_000544_070 0.1200988402 - - Peptidyl-prolyl cis-trans isomerase FKBP17-2 [Morus notabilis]

Gene co-expression network

sample Hb_003680_060 Hb_003680_060 Hb_009393_130 Hb_009393_130 Hb_003680_060--Hb_009393_130 Hb_009838_070 Hb_009838_070 Hb_003680_060--Hb_009838_070 Hb_000116_220 Hb_000116_220 Hb_003680_060--Hb_000116_220 Hb_004650_050 Hb_004650_050 Hb_003680_060--Hb_004650_050 Hb_091433_050 Hb_091433_050 Hb_003680_060--Hb_091433_050 Hb_000711_030 Hb_000711_030 Hb_003680_060--Hb_000711_030 Hb_007803_040 Hb_007803_040 Hb_009393_130--Hb_007803_040 Hb_003605_060 Hb_003605_060 Hb_009393_130--Hb_003605_060 Hb_009393_130--Hb_009838_070 Hb_010557_010 Hb_010557_010 Hb_009393_130--Hb_010557_010 Hb_002811_250 Hb_002811_250 Hb_009393_130--Hb_002811_250 Hb_009838_070--Hb_004650_050 Hb_000327_260 Hb_000327_260 Hb_009838_070--Hb_000327_260 Hb_009838_070--Hb_000711_030 Hb_004096_210 Hb_004096_210 Hb_009838_070--Hb_004096_210 Hb_000116_220--Hb_000327_260 Hb_000116_220--Hb_009838_070 Hb_007597_030 Hb_007597_030 Hb_000116_220--Hb_007597_030 Hb_005000_110 Hb_005000_110 Hb_000116_220--Hb_005000_110 Hb_000020_090 Hb_000020_090 Hb_000116_220--Hb_000020_090 Hb_004650_050--Hb_000711_030 Hb_004650_050--Hb_091433_050 Hb_004650_050--Hb_009393_130 Hb_004650_050--Hb_004096_210 Hb_002636_030 Hb_002636_030 Hb_091433_050--Hb_002636_030 Hb_091433_050--Hb_009393_130 Hb_091433_050--Hb_003605_060 Hb_005210_010 Hb_005210_010 Hb_091433_050--Hb_005210_010 Hb_001159_070 Hb_001159_070 Hb_000711_030--Hb_001159_070 Hb_000950_020 Hb_000950_020 Hb_000711_030--Hb_000950_020 Hb_000711_030--Hb_000327_260 Hb_000711_030--Hb_005000_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.372662 2.11987 14.9653 6.16445 0.100389 0.407721
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.470408 0.779986 0.32794 0.656002 15.3307

CAGE analysis