Hb_002636_030

Information

Type -
Description -
Location Contig2636: 53485-58201
Sequence    

Annotation

kegg
ID rcu:RCOM_1465980
description hypothetical protein
nr
ID KDP31424.1
description hypothetical protein JCGZ_11800 [Jatropha curcas]
swissprot
ID A8MQR0
description WPP domain-interacting tail-anchored protein 2 OS=Arabidopsis thaliana GN=WIT2 PE=1 SV=1
trembl
ID A0A067KHV2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11800 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27505: 53491-54185 , PASA_asmbl_27506: 54247-55670 , PASA_asmbl_27507: 56271-58056
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002636_030 0.0 - - hypothetical protein JCGZ_11800 [Jatropha curcas]
2 Hb_091433_050 0.0854883558 - - PREDICTED: uncharacterized protein LOC105646626 [Jatropha curcas]
3 Hb_003605_060 0.0905888016 - - PREDICTED: ATP synthase subunit delta, chloroplastic [Jatropha curcas]
4 Hb_000948_120 0.0932092152 - - PREDICTED: uncharacterized protein LOC105634688 isoform X1 [Jatropha curcas]
5 Hb_000856_280 0.0944158127 - - PREDICTED: uncharacterized protein LOC105640491 [Jatropha curcas]
6 Hb_074548_010 0.0952348157 - - PREDICTED: 28 kDa ribonucleoprotein, chloroplastic isoform X1 [Jatropha curcas]
7 Hb_010098_040 0.0990221867 - - PREDICTED: DNA-binding protein SMUBP-2 [Jatropha curcas]
8 Hb_002485_050 0.1045583973 - - PREDICTED: probable plastid-lipid-associated protein 12, chloroplastic [Jatropha curcas]
9 Hb_005210_010 0.1057086669 - - PREDICTED: uncharacterized protein LOC105638163 [Jatropha curcas]
10 Hb_000002_300 0.1111075423 - - Desacetoxyvindoline 4-hydroxylase, putative [Ricinus communis]
11 Hb_002811_250 0.1111857836 - - PREDICTED: probable ribose-5-phosphate isomerase 3, chloroplastic [Jatropha curcas]
12 Hb_009393_130 0.1159035298 - - PREDICTED: uncharacterized protein LOC105638053 isoform X4 [Jatropha curcas]
13 Hb_005523_040 0.1167414531 - - PREDICTED: uncharacterized protein LOC100253680 [Vitis vinifera]
14 Hb_000834_060 0.1207570561 - - PREDICTED: probable chlorophyll(ide) b reductase NYC1, chloroplastic isoform X1 [Jatropha curcas]
15 Hb_000618_110 0.1210885021 - - hypothetical protein POPTR_0003s09870g [Populus trichocarpa]
16 Hb_000479_210 0.121995377 - - PREDICTED: uncharacterized protein LOC105644126 [Jatropha curcas]
17 Hb_000684_200 0.1232176906 - - PREDICTED: protein IQ-DOMAIN 1-like [Jatropha curcas]
18 Hb_000041_250 0.1239290384 - - PREDICTED: uncharacterized protein LOC105641253 [Jatropha curcas]
19 Hb_003680_060 0.125056416 - - hypothetical protein VITISV_022322 [Vitis vinifera]
20 Hb_007803_040 0.1257815507 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP37, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_002636_030 Hb_002636_030 Hb_091433_050 Hb_091433_050 Hb_002636_030--Hb_091433_050 Hb_003605_060 Hb_003605_060 Hb_002636_030--Hb_003605_060 Hb_000948_120 Hb_000948_120 Hb_002636_030--Hb_000948_120 Hb_000856_280 Hb_000856_280 Hb_002636_030--Hb_000856_280 Hb_074548_010 Hb_074548_010 Hb_002636_030--Hb_074548_010 Hb_010098_040 Hb_010098_040 Hb_002636_030--Hb_010098_040 Hb_004650_050 Hb_004650_050 Hb_091433_050--Hb_004650_050 Hb_003680_060 Hb_003680_060 Hb_091433_050--Hb_003680_060 Hb_009393_130 Hb_009393_130 Hb_091433_050--Hb_009393_130 Hb_091433_050--Hb_003605_060 Hb_005210_010 Hb_005210_010 Hb_091433_050--Hb_005210_010 Hb_002485_050 Hb_002485_050 Hb_003605_060--Hb_002485_050 Hb_003605_060--Hb_000856_280 Hb_003605_060--Hb_074548_010 Hb_003605_060--Hb_009393_130 Hb_007803_040 Hb_007803_040 Hb_003605_060--Hb_007803_040 Hb_121089_010 Hb_121089_010 Hb_000948_120--Hb_121089_010 Hb_001227_140 Hb_001227_140 Hb_000948_120--Hb_001227_140 Hb_001159_070 Hb_001159_070 Hb_000948_120--Hb_001159_070 Hb_000948_120--Hb_003680_060 Hb_000140_460 Hb_000140_460 Hb_000948_120--Hb_000140_460 Hb_000856_280--Hb_002485_050 Hb_000856_280--Hb_007803_040 Hb_005523_040 Hb_005523_040 Hb_000856_280--Hb_005523_040 Hb_000856_280--Hb_005210_010 Hb_001195_290 Hb_001195_290 Hb_000856_280--Hb_001195_290 Hb_074548_010--Hb_002485_050 Hb_074548_010--Hb_005523_040 Hb_000544_070 Hb_000544_070 Hb_074548_010--Hb_000544_070 Hb_005977_040 Hb_005977_040 Hb_074548_010--Hb_005977_040 Hb_005181_120 Hb_005181_120 Hb_010098_040--Hb_005181_120 Hb_002811_250 Hb_002811_250 Hb_010098_040--Hb_002811_250 Hb_000516_080 Hb_000516_080 Hb_010098_040--Hb_000516_080 Hb_007982_040 Hb_007982_040 Hb_010098_040--Hb_007982_040 Hb_000679_080 Hb_000679_080 Hb_010098_040--Hb_000679_080 Hb_000684_200 Hb_000684_200 Hb_010098_040--Hb_000684_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.614554 6.26405 29.0277 12.8964 0.194645 0.374689
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.63169 1.23047 2.14332 3.55224 48.9091

CAGE analysis