Hb_005523_040

Information

Type -
Description -
Location Contig5523: 53378-54406
Sequence    

Annotation

kegg
ID vvi:100253680
description uncharacterized LOC100253680
nr
ID XP_002280047.1
description PREDICTED: uncharacterized protein LOC100253680 [Vitis vinifera]
swissprot
ID -
description -
trembl
ID F6H2C1
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_19s0014g05110 PE=4 SV=1
Gene Ontology
ID GO:0009507
description PREDICTED: uncharacterized protein LOC100253680

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005523_040 0.0 - - PREDICTED: uncharacterized protein LOC100253680 [Vitis vinifera]
2 Hb_001517_010 0.0824998431 - - conserved hypothetical protein [Ricinus communis]
3 Hb_005210_010 0.0833899089 - - PREDICTED: uncharacterized protein LOC105638163 [Jatropha curcas]
4 Hb_074548_010 0.0852966181 - - PREDICTED: 28 kDa ribonucleoprotein, chloroplastic isoform X1 [Jatropha curcas]
5 Hb_000856_280 0.0906683715 - - PREDICTED: uncharacterized protein LOC105640491 [Jatropha curcas]
6 Hb_005348_120 0.0919285467 - - PREDICTED: chlorophyll a-b binding protein, chloroplastic [Jatropha curcas]
7 Hb_001195_290 0.0957416897 - - PREDICTED: uncharacterized protein LOC105633792 [Jatropha curcas]
8 Hb_000906_080 0.0984497242 - - short chain alcohol dehydrogenase, putative [Ricinus communis]
9 Hb_006970_030 0.098801895 - - synaptotagmin, putative [Ricinus communis]
10 Hb_000544_070 0.0988126532 - - Peptidyl-prolyl cis-trans isomerase FKBP17-2 [Morus notabilis]
11 Hb_000390_160 0.1007962924 - - PREDICTED: adenosine kinase [Jatropha curcas]
12 Hb_005305_070 0.1012589741 - - hypothetical protein POPTR_0001s26540g [Populus trichocarpa]
13 Hb_002333_040 0.1012706127 - - hypothetical protein CISIN_1g015895mg [Citrus sinensis]
14 Hb_003605_060 0.1033821887 - - PREDICTED: ATP synthase subunit delta, chloroplastic [Jatropha curcas]
15 Hb_000107_540 0.1040141274 - - PREDICTED: uncharacterized protein LOC105635335 [Jatropha curcas]
16 Hb_021531_010 0.104886688 - - receptor-kinase, putative [Ricinus communis]
17 Hb_153258_040 0.1066543969 - - PREDICTED: type I inositol 1,4,5-trisphosphate 5-phosphatase CVP2-like [Jatropha curcas]
18 Hb_005977_040 0.1076743682 - - Photosystem I reaction center subunit IV A [Medicago truncatula]
19 Hb_002485_050 0.1095597792 - - PREDICTED: probable plastid-lipid-associated protein 12, chloroplastic [Jatropha curcas]
20 Hb_001584_210 0.1095931949 - - PREDICTED: chloroplast stem-loop binding protein of 41 kDa b, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_005523_040 Hb_005523_040 Hb_001517_010 Hb_001517_010 Hb_005523_040--Hb_001517_010 Hb_005210_010 Hb_005210_010 Hb_005523_040--Hb_005210_010 Hb_074548_010 Hb_074548_010 Hb_005523_040--Hb_074548_010 Hb_000856_280 Hb_000856_280 Hb_005523_040--Hb_000856_280 Hb_005348_120 Hb_005348_120 Hb_005523_040--Hb_005348_120 Hb_001195_290 Hb_001195_290 Hb_005523_040--Hb_001195_290 Hb_001517_010--Hb_001195_290 Hb_000107_540 Hb_000107_540 Hb_001517_010--Hb_000107_540 Hb_134949_010 Hb_134949_010 Hb_001517_010--Hb_134949_010 Hb_001584_210 Hb_001584_210 Hb_001517_010--Hb_001584_210 Hb_001691_180 Hb_001691_180 Hb_001517_010--Hb_001691_180 Hb_000049_100 Hb_000049_100 Hb_005210_010--Hb_000049_100 Hb_000390_160 Hb_000390_160 Hb_005210_010--Hb_000390_160 Hb_005210_010--Hb_001195_290 Hb_005210_010--Hb_000856_280 Hb_006970_030 Hb_006970_030 Hb_005210_010--Hb_006970_030 Hb_003605_060 Hb_003605_060 Hb_074548_010--Hb_003605_060 Hb_002485_050 Hb_002485_050 Hb_074548_010--Hb_002485_050 Hb_000544_070 Hb_000544_070 Hb_074548_010--Hb_000544_070 Hb_002636_030 Hb_002636_030 Hb_074548_010--Hb_002636_030 Hb_005977_040 Hb_005977_040 Hb_074548_010--Hb_005977_040 Hb_000856_280--Hb_003605_060 Hb_000856_280--Hb_002485_050 Hb_007803_040 Hb_007803_040 Hb_000856_280--Hb_007803_040 Hb_000856_280--Hb_001195_290 Hb_004162_250 Hb_004162_250 Hb_005348_120--Hb_004162_250 Hb_002333_040 Hb_002333_040 Hb_005348_120--Hb_002333_040 Hb_000041_250 Hb_000041_250 Hb_005348_120--Hb_000041_250 Hb_005348_120--Hb_000107_540 Hb_005348_120--Hb_006970_030 Hb_006472_040 Hb_006472_040 Hb_001195_290--Hb_006472_040 Hb_008112_020 Hb_008112_020 Hb_001195_290--Hb_008112_020 Hb_001268_170 Hb_001268_170 Hb_001195_290--Hb_001268_170 Hb_001195_290--Hb_134949_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.251024 4.56712 28.5781 12.1343 0.288781 0.310145
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.07601 0.923238 0.141874 2.13339 59.6145

CAGE analysis