Hb_074548_010

Information

Type -
Description -
Location Contig74548: 23255-26763
Sequence    

Annotation

kegg
ID rcu:RCOM_1279020
description ribonucleoprotein, chloroplast, putative
nr
ID XP_012081829.1
description PREDICTED: 28 kDa ribonucleoprotein, chloroplastic isoform X1 [Jatropha curcas]
swissprot
ID Q39061
description RNA-binding protein CP33, chloroplastic OS=Arabidopsis thaliana GN=CP33 PE=2 SV=1
trembl
ID A0A067K0D0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19129 PE=4 SV=1
Gene Ontology
ID GO:0009570
description 28 kda chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56681: 23086-26595
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_074548_010 0.0 - - PREDICTED: 28 kDa ribonucleoprotein, chloroplastic isoform X1 [Jatropha curcas]
2 Hb_003605_060 0.0709073929 - - PREDICTED: ATP synthase subunit delta, chloroplastic [Jatropha curcas]
3 Hb_002485_050 0.0822935191 - - PREDICTED: probable plastid-lipid-associated protein 12, chloroplastic [Jatropha curcas]
4 Hb_005523_040 0.0852966181 - - PREDICTED: uncharacterized protein LOC100253680 [Vitis vinifera]
5 Hb_000544_070 0.0939470829 - - Peptidyl-prolyl cis-trans isomerase FKBP17-2 [Morus notabilis]
6 Hb_002636_030 0.0952348157 - - hypothetical protein JCGZ_11800 [Jatropha curcas]
7 Hb_005977_040 0.0970133609 - - Photosystem I reaction center subunit IV A [Medicago truncatula]
8 Hb_001257_110 0.0977778912 - - PREDICTED: uncharacterized protein LOC105636396 [Jatropha curcas]
9 Hb_000120_490 0.1018733714 - - PREDICTED: MORC family CW-type zinc finger protein 3-like [Jatropha curcas]
10 Hb_000856_280 0.1034358795 - - PREDICTED: uncharacterized protein LOC105640491 [Jatropha curcas]
11 Hb_000002_300 0.1077196214 - - Desacetoxyvindoline 4-hydroxylase, putative [Ricinus communis]
12 Hb_003373_050 0.1090455085 - - receptor protein kinase zmpk1, putative [Ricinus communis]
13 Hb_000479_210 0.1092620721 - - PREDICTED: uncharacterized protein LOC105644126 [Jatropha curcas]
14 Hb_005210_010 0.112743403 - - PREDICTED: uncharacterized protein LOC105638163 [Jatropha curcas]
15 Hb_007803_040 0.1173407381 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP37, chloroplastic [Jatropha curcas]
16 Hb_021531_010 0.12109907 - - receptor-kinase, putative [Ricinus communis]
17 Hb_001541_280 0.1212910547 - - phosphate transporter [Manihot esculenta]
18 Hb_004306_090 0.1232597108 - - PREDICTED: uncharacterized protein LOC105644392 isoform X2 [Jatropha curcas]
19 Hb_002609_140 0.1237367936 - - PREDICTED: sodium-dependent phosphate transport protein 1, chloroplastic isoform X1 [Jatropha curcas]
20 Hb_005063_060 0.1247494681 transcription factor TF Family: GNAT PREDICTED: uncharacterized protein LOC105647704 [Jatropha curcas]

Gene co-expression network

sample Hb_074548_010 Hb_074548_010 Hb_003605_060 Hb_003605_060 Hb_074548_010--Hb_003605_060 Hb_002485_050 Hb_002485_050 Hb_074548_010--Hb_002485_050 Hb_005523_040 Hb_005523_040 Hb_074548_010--Hb_005523_040 Hb_000544_070 Hb_000544_070 Hb_074548_010--Hb_000544_070 Hb_002636_030 Hb_002636_030 Hb_074548_010--Hb_002636_030 Hb_005977_040 Hb_005977_040 Hb_074548_010--Hb_005977_040 Hb_003605_060--Hb_002485_050 Hb_000856_280 Hb_000856_280 Hb_003605_060--Hb_000856_280 Hb_009393_130 Hb_009393_130 Hb_003605_060--Hb_009393_130 Hb_007803_040 Hb_007803_040 Hb_003605_060--Hb_007803_040 Hb_003605_060--Hb_002636_030 Hb_002485_050--Hb_007803_040 Hb_002485_050--Hb_000856_280 Hb_002485_050--Hb_000544_070 Hb_002485_050--Hb_009393_130 Hb_001517_010 Hb_001517_010 Hb_005523_040--Hb_001517_010 Hb_005210_010 Hb_005210_010 Hb_005523_040--Hb_005210_010 Hb_005523_040--Hb_000856_280 Hb_005348_120 Hb_005348_120 Hb_005523_040--Hb_005348_120 Hb_001195_290 Hb_001195_290 Hb_005523_040--Hb_001195_290 Hb_004306_090 Hb_004306_090 Hb_000544_070--Hb_004306_090 Hb_002609_140 Hb_002609_140 Hb_000544_070--Hb_002609_140 Hb_000544_070--Hb_007803_040 Hb_004920_020 Hb_004920_020 Hb_000544_070--Hb_004920_020 Hb_091433_050 Hb_091433_050 Hb_002636_030--Hb_091433_050 Hb_000948_120 Hb_000948_120 Hb_002636_030--Hb_000948_120 Hb_002636_030--Hb_000856_280 Hb_010098_040 Hb_010098_040 Hb_002636_030--Hb_010098_040 Hb_005977_040--Hb_002609_140 Hb_005977_040--Hb_000544_070 Hb_000161_010 Hb_000161_010 Hb_005977_040--Hb_000161_010 Hb_005977_040--Hb_005523_040 Hb_001257_110 Hb_001257_110 Hb_005977_040--Hb_001257_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.54138 13.1898 49.5495 17.6844 0.718291 0.715093
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.90575 1.54283 0.484103 3.60601 84.3421

CAGE analysis