Hb_002485_050

Information

Type -
Description -
Location Contig2485: 94077-101179
Sequence    

Annotation

kegg
ID pop:POPTR_0001s04900g
description POPTRDRAFT_844363; hypothetical protein
nr
ID XP_012076272.1
description PREDICTED: probable plastid-lipid-associated protein 12, chloroplastic [Jatropha curcas]
swissprot
ID Q8LAP6
description Probable plastid-lipid-associated protein 12, chloroplastic OS=Arabidopsis thaliana GN=PAP12 PE=2 SV=1
trembl
ID A0A067KPR4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12828 PE=4 SV=1
Gene Ontology
ID GO:0009534
description probable plastid-lipid-associated protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25863: 94483-97181 , PASA_asmbl_25864: 94493-100881
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002485_050 0.0 - - PREDICTED: probable plastid-lipid-associated protein 12, chloroplastic [Jatropha curcas]
2 Hb_003605_060 0.0457220836 - - PREDICTED: ATP synthase subunit delta, chloroplastic [Jatropha curcas]
3 Hb_007803_040 0.0597579165 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP37, chloroplastic [Jatropha curcas]
4 Hb_000856_280 0.0760068061 - - PREDICTED: uncharacterized protein LOC105640491 [Jatropha curcas]
5 Hb_000544_070 0.0821892263 - - Peptidyl-prolyl cis-trans isomerase FKBP17-2 [Morus notabilis]
6 Hb_074548_010 0.0822935191 - - PREDICTED: 28 kDa ribonucleoprotein, chloroplastic isoform X1 [Jatropha curcas]
7 Hb_009393_130 0.089597695 - - PREDICTED: uncharacterized protein LOC105638053 isoform X4 [Jatropha curcas]
8 Hb_002811_250 0.0993109691 - - PREDICTED: probable ribose-5-phosphate isomerase 3, chloroplastic [Jatropha curcas]
9 Hb_005488_190 0.1005305546 - - RNA polymerase sigma factor rpoD, putative [Ricinus communis]
10 Hb_000479_210 0.1043259866 - - PREDICTED: uncharacterized protein LOC105644126 [Jatropha curcas]
11 Hb_002636_030 0.1045583973 - - hypothetical protein JCGZ_11800 [Jatropha curcas]
12 Hb_000009_510 0.1056978571 - - PREDICTED: uncharacterized protein LOC105126496 [Populus euphratica]
13 Hb_010557_010 0.1077549197 - - PREDICTED: 50S ribosomal protein L3, chloroplastic [Jatropha curcas]
14 Hb_005523_040 0.1095597792 - - PREDICTED: uncharacterized protein LOC100253680 [Vitis vinifera]
15 Hb_003680_060 0.1107099853 - - hypothetical protein VITISV_022322 [Vitis vinifera]
16 Hb_000174_080 0.1118269241 - - 4-nitrophenylphosphatase, putative [Ricinus communis]
17 Hb_005977_040 0.1125651501 - - Photosystem I reaction center subunit IV A [Medicago truncatula]
18 Hb_000302_230 0.1157912766 - - conserved hypothetical protein [Ricinus communis]
19 Hb_005210_010 0.1163585422 - - PREDICTED: uncharacterized protein LOC105638163 [Jatropha curcas]
20 Hb_058620_080 0.1167380885 - - PREDICTED: phosphoglycerate kinase, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_002485_050 Hb_002485_050 Hb_003605_060 Hb_003605_060 Hb_002485_050--Hb_003605_060 Hb_007803_040 Hb_007803_040 Hb_002485_050--Hb_007803_040 Hb_000856_280 Hb_000856_280 Hb_002485_050--Hb_000856_280 Hb_000544_070 Hb_000544_070 Hb_002485_050--Hb_000544_070 Hb_074548_010 Hb_074548_010 Hb_002485_050--Hb_074548_010 Hb_009393_130 Hb_009393_130 Hb_002485_050--Hb_009393_130 Hb_003605_060--Hb_000856_280 Hb_003605_060--Hb_074548_010 Hb_003605_060--Hb_009393_130 Hb_003605_060--Hb_007803_040 Hb_002636_030 Hb_002636_030 Hb_003605_060--Hb_002636_030 Hb_007803_040--Hb_000856_280 Hb_007803_040--Hb_009393_130 Hb_005488_190 Hb_005488_190 Hb_007803_040--Hb_005488_190 Hb_007803_040--Hb_000544_070 Hb_005523_040 Hb_005523_040 Hb_000856_280--Hb_005523_040 Hb_005210_010 Hb_005210_010 Hb_000856_280--Hb_005210_010 Hb_001195_290 Hb_001195_290 Hb_000856_280--Hb_001195_290 Hb_004306_090 Hb_004306_090 Hb_000544_070--Hb_004306_090 Hb_002609_140 Hb_002609_140 Hb_000544_070--Hb_002609_140 Hb_004920_020 Hb_004920_020 Hb_000544_070--Hb_004920_020 Hb_000544_070--Hb_074548_010 Hb_074548_010--Hb_005523_040 Hb_074548_010--Hb_002636_030 Hb_005977_040 Hb_005977_040 Hb_074548_010--Hb_005977_040 Hb_003680_060 Hb_003680_060 Hb_009393_130--Hb_003680_060 Hb_009838_070 Hb_009838_070 Hb_009393_130--Hb_009838_070 Hb_010557_010 Hb_010557_010 Hb_009393_130--Hb_010557_010 Hb_002811_250 Hb_002811_250 Hb_009393_130--Hb_002811_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.926029 4.4839 31.3209 8.87373 0.927159 0.894094
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.30723 1.68497 0.618954 2.08488 45.8248

CAGE analysis