Hb_004306_090

Information

Type -
Description -
Location Contig4306: 38332-43825
Sequence    

Annotation

kegg
ID pop:POPTR_0002s24430g
description POPTRDRAFT_756265; hypothetical protein
nr
ID XP_012085104.1
description PREDICTED: uncharacterized protein LOC105644392 isoform X2 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9GQI3
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s24430g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42177: 38249-43752 , PASA_asmbl_42178: 38257-40329
cDNA
(Sanger)
(ID:Location)		 006_C22.ab1: 42786-43678 , 037_A19.ab1: 42552-43709

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004306_090 0.0 - - PREDICTED: uncharacterized protein LOC105644392 isoform X2 [Jatropha curcas]
2 Hb_005211_080 0.0638070897 - - hypothetical protein POPTR_0010s13740g [Populus trichocarpa]
3 Hb_005329_010 0.066583253 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g11410 [Jatropha curcas]
4 Hb_000544_070 0.0723823176 - - Peptidyl-prolyl cis-trans isomerase FKBP17-2 [Morus notabilis]
5 Hb_000460_040 0.0764782168 - - PREDICTED: protein phosphatase 2C 57 [Jatropha curcas]
6 Hb_001006_150 0.0788287818 transcription factor TF Family: C2H2 zinc finger protein, putative [Ricinus communis]
7 Hb_005433_020 0.0816282274 - - PREDICTED: multicopper oxidase LPR1 [Jatropha curcas]
8 Hb_005527_070 0.0816937972 - - short-chain dehydrogenase/reductase family protein [Populus trichocarpa]
9 Hb_001338_120 0.0826656966 - - hypothetical chloroplast RF68 (chloroplast) [Ipomoea batatas]
10 Hb_001766_160 0.0830820349 - - Serine/threonine-protein kinase SAPK1 [Gossypium arboreum]
11 Hb_000962_090 0.0836975346 - - omega-6 fatty acid desaturase [Hevea brasiliensis]
12 Hb_007597_030 0.0865999719 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
13 Hb_002609_140 0.0876817986 - - PREDICTED: sodium-dependent phosphate transport protein 1, chloroplastic isoform X1 [Jatropha curcas]
14 Hb_000088_230 0.0886925758 - - hypothetical protein POPTR_0013s11340g [Populus trichocarpa]
15 Hb_001343_030 0.0898361383 - - PREDICTED: NAD(P)H-quinone oxidoreductase subunit N, chloroplastic [Jatropha curcas]
16 Hb_002871_180 0.0906497542 - - photosystem II 10 kDa polypeptide, chloroplastic [Jatropha curcas]
17 Hb_000359_050 0.0924193947 - - Oxygen-evolving enhancer protein 2, chloroplast precursor, putative [Ricinus communis]
18 Hb_003373_050 0.0928454149 - - receptor protein kinase zmpk1, putative [Ricinus communis]
19 Hb_007477_060 0.0952498353 - - unknown [Medicago truncatula]
20 Hb_000445_270 0.0958655681 - - ATP binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_004306_090 Hb_004306_090 Hb_005211_080 Hb_005211_080 Hb_004306_090--Hb_005211_080 Hb_005329_010 Hb_005329_010 Hb_004306_090--Hb_005329_010 Hb_000544_070 Hb_000544_070 Hb_004306_090--Hb_000544_070 Hb_000460_040 Hb_000460_040 Hb_004306_090--Hb_000460_040 Hb_001006_150 Hb_001006_150 Hb_004306_090--Hb_001006_150 Hb_005433_020 Hb_005433_020 Hb_004306_090--Hb_005433_020 Hb_000962_090 Hb_000962_090 Hb_005211_080--Hb_000962_090 Hb_000359_050 Hb_000359_050 Hb_005211_080--Hb_000359_050 Hb_005211_080--Hb_001006_150 Hb_005211_080--Hb_005329_010 Hb_001766_160 Hb_001766_160 Hb_005211_080--Hb_001766_160 Hb_005329_010--Hb_001766_160 Hb_000088_230 Hb_000088_230 Hb_005329_010--Hb_000088_230 Hb_005329_010--Hb_001006_150 Hb_001322_120 Hb_001322_120 Hb_005329_010--Hb_001322_120 Hb_005329_010--Hb_000460_040 Hb_002485_050 Hb_002485_050 Hb_000544_070--Hb_002485_050 Hb_002609_140 Hb_002609_140 Hb_000544_070--Hb_002609_140 Hb_007803_040 Hb_007803_040 Hb_000544_070--Hb_007803_040 Hb_004920_020 Hb_004920_020 Hb_000544_070--Hb_004920_020 Hb_074548_010 Hb_074548_010 Hb_000544_070--Hb_074548_010 Hb_000460_040--Hb_000088_230 Hb_001699_140 Hb_001699_140 Hb_000460_040--Hb_001699_140 Hb_007477_060 Hb_007477_060 Hb_000460_040--Hb_007477_060 Hb_003494_090 Hb_003494_090 Hb_000460_040--Hb_003494_090 Hb_000460_040--Hb_005211_080 Hb_001006_150--Hb_000359_050 Hb_000445_270 Hb_000445_270 Hb_001006_150--Hb_000445_270 Hb_001006_150--Hb_001766_160 Hb_000340_280 Hb_000340_280 Hb_001006_150--Hb_000340_280 Hb_001338_120 Hb_001338_120 Hb_001006_150--Hb_001338_120 Hb_003373_050 Hb_003373_050 Hb_005433_020--Hb_003373_050 Hb_005433_020--Hb_000460_040 Hb_005433_020--Hb_000088_230 Hb_002010_030 Hb_002010_030 Hb_005433_020--Hb_002010_030 Hb_002871_180 Hb_002871_180 Hb_005433_020--Hb_002871_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.04144 1.44698 10.8858 3.01827 0.0397138 0.121136
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0629411 0.123793 0.0465045 0.177904 13.4115

CAGE analysis