Hb_007477_060

Information

Type -
Description -
Location Contig7477: 51116-52884
Sequence    

Annotation

kegg
ID mtr:MTR_7g099390
description Photosystem I reaction center subunit IV A
nr
ID ACJ84185.1
description unknown [Medicago truncatula]
swissprot
ID Q41228
description Photosystem I reaction center subunit IV A, chloroplastic OS=Nicotiana sylvestris GN=PSAEA PE=1 SV=1
trembl
ID B7FHF6
description Uncharacterized protein OS=Medicago truncatula PE=2 SV=1
Gene Ontology
ID GO:0009536
description photosystem i reaction center subunit iv chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56713: 51086-52959
cDNA
(Sanger)
(ID:Location)		 006_J09.ab1: 51425-52957 , 011_L21.ab1: 51461-52916 , 025_P10.ab1: 51438-52916 , 028_I06.ab1: 51476-52860 , 029_D12.ab1: 51484-52916 , 029_N21.ab1: 51417-52916 , 033_C20.ab1: 51476-52860 , 036_H09.ab1: 51389-52934 , 038_M07.ab1: 51476-52959 , 040_I12.ab1: 51516-52917 , 046_M02.ab1: 51331-52900 , 051_E05.ab1: 51518-52916

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007477_060 0.0 - - unknown [Medicago truncatula]
2 Hb_000101_330 0.0375553122 - - -
3 Hb_002871_180 0.0422241982 - - photosystem II 10 kDa polypeptide, chloroplastic [Jatropha curcas]
4 Hb_006570_030 0.0496928819 - - PREDICTED: ferredoxin--NADP reductase, leaf isozyme, chloroplastic [Jatropha curcas]
5 Hb_001766_160 0.0513820286 - - Serine/threonine-protein kinase SAPK1 [Gossypium arboreum]
6 Hb_003536_020 0.0533744719 - - PREDICTED: splicing factor 3A subunit 2 [Jatropha curcas]
7 Hb_001322_120 0.0603661205 - - nutrient reservoir, putative [Ricinus communis]
8 Hb_001699_140 0.0603799276 - - PREDICTED: ferredoxin--NADP reductase, leaf isozyme, chloroplastic [Jatropha curcas]
9 Hb_005063_030 0.0657749567 - - Photosystem II reaction center W protein, chloroplast precursor, putative [Ricinus communis]
10 Hb_005329_010 0.0675964995 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g11410 [Jatropha curcas]
11 Hb_005649_060 0.0684333516 - - PREDICTED: uncharacterized protein LOC105644161 [Jatropha curcas]
12 Hb_000139_310 0.069738122 - - PREDICTED: glucose-1-phosphate adenylyltransferase large subunit 1, chloroplastic [Jatropha curcas]
13 Hb_002368_060 0.0698262592 - - conserved hypothetical protein [Ricinus communis]
14 Hb_080922_010 0.0700145706 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
15 Hb_001416_130 0.0716586414 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000460_040 0.0726395946 - - PREDICTED: protein phosphatase 2C 57 [Jatropha curcas]
17 Hb_001292_030 0.0736823614 - - PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic [Jatropha curcas]
18 Hb_001028_040 0.0738641242 - - hypothetical protein POPTR_0018s09860g [Populus trichocarpa]
19 Hb_000077_380 0.0742281184 - - PREDICTED: protochlorophyllide reductase [Jatropha curcas]
20 Hb_001975_100 0.0752767129 - - chlorophyll a-b binding protein 151, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_007477_060 Hb_007477_060 Hb_000101_330 Hb_000101_330 Hb_007477_060--Hb_000101_330 Hb_002871_180 Hb_002871_180 Hb_007477_060--Hb_002871_180 Hb_006570_030 Hb_006570_030 Hb_007477_060--Hb_006570_030 Hb_001766_160 Hb_001766_160 Hb_007477_060--Hb_001766_160 Hb_003536_020 Hb_003536_020 Hb_007477_060--Hb_003536_020 Hb_001322_120 Hb_001322_120 Hb_007477_060--Hb_001322_120 Hb_000101_330--Hb_006570_030 Hb_005063_030 Hb_005063_030 Hb_000101_330--Hb_005063_030 Hb_001028_040 Hb_001028_040 Hb_000101_330--Hb_001028_040 Hb_001699_140 Hb_001699_140 Hb_000101_330--Hb_001699_140 Hb_002368_060 Hb_002368_060 Hb_000101_330--Hb_002368_060 Hb_005649_060 Hb_005649_060 Hb_002871_180--Hb_005649_060 Hb_002871_180--Hb_006570_030 Hb_002871_180--Hb_001766_160 Hb_002871_180--Hb_001322_120 Hb_002871_180--Hb_000101_330 Hb_000139_310 Hb_000139_310 Hb_006570_030--Hb_000139_310 Hb_006570_030--Hb_002368_060 Hb_006570_030--Hb_001028_040 Hb_006570_030--Hb_001322_120 Hb_001292_030 Hb_001292_030 Hb_006570_030--Hb_001292_030 Hb_001416_130 Hb_001416_130 Hb_006570_030--Hb_001416_130 Hb_001766_160--Hb_001322_120 Hb_001766_160--Hb_005649_060 Hb_000531_100 Hb_000531_100 Hb_001766_160--Hb_000531_100 Hb_001006_150 Hb_001006_150 Hb_001766_160--Hb_001006_150 Hb_080922_010 Hb_080922_010 Hb_003536_020--Hb_080922_010 Hb_003536_020--Hb_000101_330 Hb_003536_020--Hb_001699_140 Hb_003536_020--Hb_002871_180 Hb_000116_090 Hb_000116_090 Hb_003536_020--Hb_000116_090 Hb_001322_120--Hb_001292_030 Hb_002785_030 Hb_002785_030 Hb_001322_120--Hb_002785_030 Hb_002529_120 Hb_002529_120 Hb_001322_120--Hb_002529_120 Hb_001006_040 Hb_001006_040 Hb_001322_120--Hb_001006_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0838044 55.193 385.4 122.436 0.0448454 0.0751196
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.603269 0.301916 0 9.85034 637.039

CAGE analysis