Hb_001028_040

Information

Type -
Description -
Location Contig1028: 61223-63840
Sequence    

Annotation

kegg
ID pop:POPTR_0018s09860g
description POPTRDRAFT_911310; hypothetical protein
nr
ID XP_002325042.1
description hypothetical protein POPTR_0018s09860g [Populus trichocarpa]
swissprot
ID Q5XF57
description Probable receptor-like serine/threonine-protein kinase At5g57670 OS=Arabidopsis thaliana GN=At5g57670 PE=2 SV=1
trembl
ID B9ILX5
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0018s09860g PE=3 SV=1
Gene Ontology
ID GO:0004674
description probable receptor-like serine threonine-protein kinase at5g57670

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001028_040 0.0 - - hypothetical protein POPTR_0018s09860g [Populus trichocarpa]
2 Hb_002368_060 0.0234356749 - - conserved hypothetical protein [Ricinus communis]
3 Hb_006570_030 0.0376882481 - - PREDICTED: ferredoxin--NADP reductase, leaf isozyme, chloroplastic [Jatropha curcas]
4 Hb_000139_310 0.0414200706 - - PREDICTED: glucose-1-phosphate adenylyltransferase large subunit 1, chloroplastic [Jatropha curcas]
5 Hb_002785_030 0.0454079394 - - Polyketide cyclase/dehydrase and lipid transport superfamily protein [Theobroma cacao]
6 Hb_001322_120 0.0578669328 - - nutrient reservoir, putative [Ricinus communis]
7 Hb_001292_030 0.0581467712 - - PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic [Jatropha curcas]
8 Hb_000101_330 0.0597598058 - - -
9 Hb_001006_040 0.0602011399 - - PREDICTED: pentatricopeptide repeat-containing protein At5g13770, chloroplastic-like isoform X1 [Populus euphratica]
10 Hb_001416_130 0.0618146641 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000589_340 0.0632425377 - - unknown [Populus trichocarpa x Populus deltoides]
12 Hb_005063_030 0.0652472028 - - Photosystem II reaction center W protein, chloroplast precursor, putative [Ricinus communis]
13 Hb_001892_080 0.067141591 - - Clavata3/esr-related 16, putative [Theobroma cacao]
14 Hb_001975_100 0.0699843759 - - chlorophyll a-b binding protein 151, chloroplastic [Jatropha curcas]
15 Hb_000545_180 0.0728825314 - - Photosystem II stability/assembly factor HCF136, chloroplast precursor, putative [Ricinus communis]
16 Hb_007477_060 0.0738641242 - - unknown [Medicago truncatula]
17 Hb_000077_380 0.0748460488 - - PREDICTED: protochlorophyllide reductase [Jatropha curcas]
18 Hb_002529_120 0.0761248127 - - PREDICTED: cyclin-dependent kinase inhibitor 7-like [Jatropha curcas]
19 Hb_001269_030 0.0784217623 - - PREDICTED: pleiotropic drug resistance protein 1-like [Jatropha curcas]
20 Hb_002871_180 0.0796772181 - - photosystem II 10 kDa polypeptide, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_001028_040 Hb_001028_040 Hb_002368_060 Hb_002368_060 Hb_001028_040--Hb_002368_060 Hb_006570_030 Hb_006570_030 Hb_001028_040--Hb_006570_030 Hb_000139_310 Hb_000139_310 Hb_001028_040--Hb_000139_310 Hb_002785_030 Hb_002785_030 Hb_001028_040--Hb_002785_030 Hb_001322_120 Hb_001322_120 Hb_001028_040--Hb_001322_120 Hb_001292_030 Hb_001292_030 Hb_001028_040--Hb_001292_030 Hb_002368_060--Hb_006570_030 Hb_002368_060--Hb_000139_310 Hb_002368_060--Hb_002785_030 Hb_002368_060--Hb_001322_120 Hb_002368_060--Hb_001292_030 Hb_006570_030--Hb_000139_310 Hb_006570_030--Hb_001322_120 Hb_006570_030--Hb_001292_030 Hb_001416_130 Hb_001416_130 Hb_006570_030--Hb_001416_130 Hb_000139_310--Hb_001416_130 Hb_000589_340 Hb_000589_340 Hb_000139_310--Hb_000589_340 Hb_000139_310--Hb_001292_030 Hb_001006_040 Hb_001006_040 Hb_002785_030--Hb_001006_040 Hb_002785_030--Hb_001292_030 Hb_002529_120 Hb_002529_120 Hb_002785_030--Hb_002529_120 Hb_002785_030--Hb_001322_120 Hb_001322_120--Hb_001292_030 Hb_001322_120--Hb_002529_120 Hb_001322_120--Hb_001006_040 Hb_001766_160 Hb_001766_160 Hb_001322_120--Hb_001766_160 Hb_001292_030--Hb_001006_040 Hb_000230_420 Hb_000230_420 Hb_001292_030--Hb_000230_420 Hb_001975_100 Hb_001975_100 Hb_001292_030--Hb_001975_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0161064 0.119072 0.0474123 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.21532

CAGE analysis