Hb_001416_130

Information

Type -
Description -
Location Contig1416: 190915-193040
Sequence    

Annotation

kegg
ID rcu:RCOM_0853880
description hypothetical protein
nr
ID XP_002517450.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RUK5
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0853880 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11188: 191367-191777 , PASA_asmbl_11189: 192741-192914
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001416_130 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000139_310 0.0328017908 - - PREDICTED: glucose-1-phosphate adenylyltransferase large subunit 1, chloroplastic [Jatropha curcas]
3 Hb_000589_340 0.0376090158 - - unknown [Populus trichocarpa x Populus deltoides]
4 Hb_006570_030 0.0476184964 - - PREDICTED: ferredoxin--NADP reductase, leaf isozyme, chloroplastic [Jatropha curcas]
5 Hb_029079_010 0.0504886914 - - receptor-kinase, putative [Ricinus communis]
6 Hb_001892_080 0.0580912731 - - Clavata3/esr-related 16, putative [Theobroma cacao]
7 Hb_000545_180 0.0603146045 - - Photosystem II stability/assembly factor HCF136, chloroplast precursor, putative [Ricinus communis]
8 Hb_001028_040 0.0618146641 - - hypothetical protein POPTR_0018s09860g [Populus trichocarpa]
9 Hb_001277_430 0.062185713 - - PREDICTED: protein IQ-DOMAIN 14 [Jatropha curcas]
10 Hb_002368_060 0.0655226693 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000450_050 0.0672614559 - - PREDICTED: benzyl alcohol O-benzoyltransferase-like [Jatropha curcas]
12 Hb_117807_020 0.0685470464 - - methyltransferase, putative [Ricinus communis]
13 Hb_000101_330 0.0685898728 - - -
14 Hb_002871_180 0.0699806889 - - photosystem II 10 kDa polypeptide, chloroplastic [Jatropha curcas]
15 Hb_007477_060 0.0716586414 - - unknown [Medicago truncatula]
16 Hb_001292_030 0.0747733811 - - PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic [Jatropha curcas]
17 Hb_001322_120 0.075321036 - - nutrient reservoir, putative [Ricinus communis]
18 Hb_001958_060 0.0758493836 - - PREDICTED: calcium uptake protein 1, mitochondrial-like [Jatropha curcas]
19 Hb_001766_160 0.0767257046 - - Serine/threonine-protein kinase SAPK1 [Gossypium arboreum]
20 Hb_005000_120 0.0792452052 transcription factor TF Family: C2C2-GATA hypothetical protein RCOM_1046780 [Ricinus communis]

Gene co-expression network

sample Hb_001416_130 Hb_001416_130 Hb_000139_310 Hb_000139_310 Hb_001416_130--Hb_000139_310 Hb_000589_340 Hb_000589_340 Hb_001416_130--Hb_000589_340 Hb_006570_030 Hb_006570_030 Hb_001416_130--Hb_006570_030 Hb_029079_010 Hb_029079_010 Hb_001416_130--Hb_029079_010 Hb_001892_080 Hb_001892_080 Hb_001416_130--Hb_001892_080 Hb_000545_180 Hb_000545_180 Hb_001416_130--Hb_000545_180 Hb_000139_310--Hb_006570_030 Hb_000139_310--Hb_000589_340 Hb_001028_040 Hb_001028_040 Hb_000139_310--Hb_001028_040 Hb_002368_060 Hb_002368_060 Hb_000139_310--Hb_002368_060 Hb_001292_030 Hb_001292_030 Hb_000139_310--Hb_001292_030 Hb_000450_050 Hb_000450_050 Hb_000589_340--Hb_000450_050 Hb_000589_340--Hb_006570_030 Hb_005276_080 Hb_005276_080 Hb_000589_340--Hb_005276_080 Hb_002785_040 Hb_002785_040 Hb_000589_340--Hb_002785_040 Hb_006570_030--Hb_002368_060 Hb_006570_030--Hb_001028_040 Hb_001322_120 Hb_001322_120 Hb_006570_030--Hb_001322_120 Hb_006570_030--Hb_001292_030 Hb_001277_430 Hb_001277_430 Hb_029079_010--Hb_001277_430 Hb_029079_010--Hb_000139_310 Hb_029079_010--Hb_001892_080 Hb_029079_010--Hb_006570_030 Hb_029079_010--Hb_000589_340 Hb_001892_080--Hb_000139_310 Hb_001269_030 Hb_001269_030 Hb_001892_080--Hb_001269_030 Hb_000307_150 Hb_000307_150 Hb_001892_080--Hb_000307_150 Hb_001892_080--Hb_001028_040 Hb_001892_080--Hb_000589_340 Hb_000352_230 Hb_000352_230 Hb_000545_180--Hb_000352_230 Hb_014361_120 Hb_014361_120 Hb_000545_180--Hb_014361_120 Hb_009771_090 Hb_009771_090 Hb_000545_180--Hb_009771_090 Hb_000098_040 Hb_000098_040 Hb_000545_180--Hb_000098_040 Hb_000545_180--Hb_001269_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.27278 11.4807 3.47978 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0880763 0 0 0.0368529 22.3736

CAGE analysis