Hb_001277_430

Information

Type -
Description -
Location Contig1277: 412407-414126
Sequence    

Annotation

kegg
ID rcu:RCOM_0911150
description calmodulin binding protein, putative
nr
ID XP_012069691.1
description PREDICTED: protein IQ-DOMAIN 14 [Jatropha curcas]
swissprot
ID Q8L4D8
description Protein IQ-DOMAIN 31 OS=Arabidopsis thaliana GN=IQD31 PE=1 SV=1
trembl
ID A0A067L842
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02222 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001277_430 0.0 - - PREDICTED: protein IQ-DOMAIN 14 [Jatropha curcas]
2 Hb_029079_010 0.0601650022 - - receptor-kinase, putative [Ricinus communis]
3 Hb_001416_130 0.062185713 - - conserved hypothetical protein [Ricinus communis]
4 Hb_117807_020 0.0793513859 - - methyltransferase, putative [Ricinus communis]
5 Hb_000589_340 0.0801198278 - - unknown [Populus trichocarpa x Populus deltoides]
6 Hb_005000_120 0.0826537606 transcription factor TF Family: C2C2-GATA hypothetical protein RCOM_1046780 [Ricinus communis]
7 Hb_000450_050 0.0840255009 - - PREDICTED: benzyl alcohol O-benzoyltransferase-like [Jatropha curcas]
8 Hb_000111_460 0.0878792021 - - PREDICTED: uncharacterized protein LOC105631266 [Jatropha curcas]
9 Hb_000139_310 0.0884570129 - - PREDICTED: glucose-1-phosphate adenylyltransferase large subunit 1, chloroplastic [Jatropha curcas]
10 Hb_001621_090 0.0889854267 - - hypothetical protein POPTR_0010s20810g [Populus trichocarpa]
11 Hb_027380_080 0.0916798547 - - hypothetical protein JCGZ_04649 [Jatropha curcas]
12 Hb_008748_050 0.0926442071 - - PREDICTED: chlorophyll a-b binding protein CP24 10A, chloroplastic-like [Populus euphratica]
13 Hb_005276_080 0.0932567445 - - PREDICTED: chloroplast stem-loop binding protein of 41 kDa a, chloroplastic [Jatropha curcas]
14 Hb_000039_210 0.0957550155 - - PREDICTED: uncharacterized protein LOC105649449 [Jatropha curcas]
15 Hb_000545_180 0.0977354137 - - Photosystem II stability/assembly factor HCF136, chloroplast precursor, putative [Ricinus communis]
16 Hb_001046_060 0.0988663815 - - PREDICTED: UDP-glucose flavonoid 3-O-glucosyltransferase 7-like [Fragaria vesca subsp. vesca]
17 Hb_001892_080 0.1001723569 - - Clavata3/esr-related 16, putative [Theobroma cacao]
18 Hb_006570_030 0.1006713257 - - PREDICTED: ferredoxin--NADP reductase, leaf isozyme, chloroplastic [Jatropha curcas]
19 Hb_001006_160 0.1014090685 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
20 Hb_000482_030 0.1021537704 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein NUTCRACKER-like isoform X1 [Populus euphratica]

Gene co-expression network

sample Hb_001277_430 Hb_001277_430 Hb_029079_010 Hb_029079_010 Hb_001277_430--Hb_029079_010 Hb_001416_130 Hb_001416_130 Hb_001277_430--Hb_001416_130 Hb_117807_020 Hb_117807_020 Hb_001277_430--Hb_117807_020 Hb_000589_340 Hb_000589_340 Hb_001277_430--Hb_000589_340 Hb_005000_120 Hb_005000_120 Hb_001277_430--Hb_005000_120 Hb_000450_050 Hb_000450_050 Hb_001277_430--Hb_000450_050 Hb_029079_010--Hb_001416_130 Hb_000139_310 Hb_000139_310 Hb_029079_010--Hb_000139_310 Hb_001892_080 Hb_001892_080 Hb_029079_010--Hb_001892_080 Hb_006570_030 Hb_006570_030 Hb_029079_010--Hb_006570_030 Hb_029079_010--Hb_000589_340 Hb_001416_130--Hb_000139_310 Hb_001416_130--Hb_000589_340 Hb_001416_130--Hb_006570_030 Hb_001416_130--Hb_001892_080 Hb_000545_180 Hb_000545_180 Hb_001416_130--Hb_000545_180 Hb_000083_180 Hb_000083_180 Hb_117807_020--Hb_000083_180 Hb_005276_080 Hb_005276_080 Hb_117807_020--Hb_005276_080 Hb_001766_160 Hb_001766_160 Hb_117807_020--Hb_001766_160 Hb_117807_020--Hb_000450_050 Hb_117807_020--Hb_000589_340 Hb_000230_420 Hb_000230_420 Hb_117807_020--Hb_000230_420 Hb_000589_340--Hb_000139_310 Hb_000589_340--Hb_000450_050 Hb_000589_340--Hb_006570_030 Hb_000589_340--Hb_005276_080 Hb_002785_040 Hb_002785_040 Hb_000589_340--Hb_002785_040 Hb_001046_060 Hb_001046_060 Hb_005000_120--Hb_001046_060 Hb_001287_070 Hb_001287_070 Hb_005000_120--Hb_001287_070 Hb_001621_090 Hb_001621_090 Hb_005000_120--Hb_001621_090 Hb_011068_010 Hb_011068_010 Hb_005000_120--Hb_011068_010 Hb_000039_210 Hb_000039_210 Hb_005000_120--Hb_000039_210 Hb_000111_460 Hb_000111_460 Hb_005000_120--Hb_000111_460 Hb_000450_050--Hb_001621_090 Hb_000450_050--Hb_005000_120 Hb_000450_050--Hb_005276_080 Hb_006665_020 Hb_006665_020 Hb_000450_050--Hb_006665_020 Hb_008748_050 Hb_008748_050 Hb_000450_050--Hb_008748_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0795752 0.925428 0.22584 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0331365 0 0 0.0104131 1.90456

CAGE analysis