Hb_002785_040

Information

Type -
Description -
Location Contig2785: 52076-54963
Sequence    

Annotation

kegg
ID rcu:RCOM_0498670
description sedoheptulose-1,7-bisphosphatase, chloroplast, putative (EC:3.1.3.37)
nr
ID XP_002530415.1
description sedoheptulose-1,7-bisphosphatase, chloroplast, putative [Ricinus communis]
swissprot
ID O20252
description Sedoheptulose-1,7-bisphosphatase, chloroplastic OS=Spinacia oleracea PE=2 SV=1
trembl
ID B9SWP6
description Sedoheptulose-1,7-bisphosphatase, chloroplast, putative OS=Ricinus communis GN=RCOM_0498670 PE=3 SV=1
Gene Ontology
ID GO:0009570
description sedoheptulose- - chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29106: 52131-54900
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002785_040 0.0 - - sedoheptulose-1,7-bisphosphatase, chloroplast, putative [Ricinus communis]
2 Hb_003747_090 0.0241381426 - - PREDICTED: glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic isoform X2 [Jatropha curcas]
3 Hb_005375_090 0.0356770946 - - PREDICTED: protein CURVATURE THYLAKOID 1B, chloroplastic [Jatropha curcas]
4 Hb_013405_110 0.0364792839 - - multidrug resistance pump, putative [Ricinus communis]
5 Hb_086022_020 0.0425683472 - - RecName: Full=Ribulose bisphosphate carboxylase small chain, chloroplastic; Short=RuBisCO small subunit; Flags: Precursor [Hevea brasiliensis]
6 Hb_004129_170 0.0542139294 - - PREDICTED: protein trichome birefringence-like 43 [Jatropha curcas]
7 Hb_000320_370 0.0544178883 - - PREDICTED: ATP synthase gamma chain, chloroplastic [Jatropha curcas]
8 Hb_001006_160 0.056680511 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
9 Hb_008748_050 0.0577369217 - - PREDICTED: chlorophyll a-b binding protein CP24 10A, chloroplastic-like [Populus euphratica]
10 Hb_000450_050 0.0616696865 - - PREDICTED: benzyl alcohol O-benzoyltransferase-like [Jatropha curcas]
11 Hb_000589_340 0.0624228982 - - unknown [Populus trichocarpa x Populus deltoides]
12 Hb_002890_170 0.0655835122 transcription factor TF Family: zf-HD PREDICTED: zinc-finger homeodomain protein 4-like [Populus euphratica]
13 Hb_176135_010 0.0657480468 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
14 Hb_002400_200 0.0658042332 - - 14 kDa proline-rich protein DC2.15 precursor, putative [Ricinus communis]
15 Hb_005276_080 0.0658685791 - - PREDICTED: chloroplast stem-loop binding protein of 41 kDa a, chloroplastic [Jatropha curcas]
16 Hb_082402_020 0.0660261356 - - PREDICTED: aluminum-activated malate transporter 8-like [Jatropha curcas]
17 Hb_027380_080 0.0665621725 - - hypothetical protein JCGZ_04649 [Jatropha curcas]
18 Hb_003038_060 0.0665911991 - - hypothetical protein POPTR_0007s13050g [Populus trichocarpa]
19 Hb_000251_160 0.0673543489 - - chlorophyll A/B binding protein, putative [Ricinus communis]
20 Hb_000230_420 0.0673870467 - - GS [Hevea brasiliensis subsp. brasiliensis]

Gene co-expression network

sample Hb_002785_040 Hb_002785_040 Hb_003747_090 Hb_003747_090 Hb_002785_040--Hb_003747_090 Hb_005375_090 Hb_005375_090 Hb_002785_040--Hb_005375_090 Hb_013405_110 Hb_013405_110 Hb_002785_040--Hb_013405_110 Hb_086022_020 Hb_086022_020 Hb_002785_040--Hb_086022_020 Hb_004129_170 Hb_004129_170 Hb_002785_040--Hb_004129_170 Hb_000320_370 Hb_000320_370 Hb_002785_040--Hb_000320_370 Hb_003747_090--Hb_005375_090 Hb_003747_090--Hb_013405_110 Hb_003747_090--Hb_004129_170 Hb_002890_170 Hb_002890_170 Hb_003747_090--Hb_002890_170 Hb_082402_020 Hb_082402_020 Hb_003747_090--Hb_082402_020 Hb_005375_090--Hb_013405_110 Hb_005375_090--Hb_002890_170 Hb_005375_090--Hb_004129_170 Hb_005375_090--Hb_082402_020 Hb_002400_200 Hb_002400_200 Hb_013405_110--Hb_002400_200 Hb_000703_340 Hb_000703_340 Hb_013405_110--Hb_000703_340 Hb_002592_040 Hb_002592_040 Hb_013405_110--Hb_002592_040 Hb_000251_160 Hb_000251_160 Hb_086022_020--Hb_000251_160 Hb_086022_020--Hb_004129_170 Hb_008748_050 Hb_008748_050 Hb_086022_020--Hb_008748_050 Hb_086022_020--Hb_003747_090 Hb_086022_020--Hb_005375_090 Hb_004129_170--Hb_000251_160 Hb_002374_480 Hb_002374_480 Hb_004129_170--Hb_002374_480 Hb_153106_010 Hb_153106_010 Hb_004129_170--Hb_153106_010 Hb_180007_010 Hb_180007_010 Hb_004129_170--Hb_180007_010 Hb_002809_030 Hb_002809_030 Hb_000320_370--Hb_002809_030 Hb_000320_370--Hb_086022_020 Hb_000352_230 Hb_000352_230 Hb_000320_370--Hb_000352_230 Hb_000320_370--Hb_008748_050 Hb_000589_340 Hb_000589_340 Hb_000320_370--Hb_000589_340
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0130056 2.57268 107.008 35.2947 0.0121791 0.0243311
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.148076 0.0465993 0 0.0464728 217.417

CAGE analysis