Hb_153106_010

Information

Type -
Description -
Location Contig153106: 84-512
Sequence    

Annotation

kegg
ID pxb:103933068
description putative receptor-like protein kinase At3g47110
nr
ID KDP44808.1
description hypothetical protein JCGZ_01308 [Jatropha curcas]
swissprot
ID C0LGP4
description Probable LRR receptor-like serine/threonine-protein kinase At3g47570 OS=Arabidopsis thaliana GN=At3g47570 PE=2 SV=1
trembl
ID A0A067LC70
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01308 PE=4 SV=1
Gene Ontology
ID GO:0016021
description probable lrr receptor-like serine threonine-protein kinase at3g47570

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_153106_010 0.0 - - hypothetical protein JCGZ_01308 [Jatropha curcas]
2 Hb_180007_010 0.0177286791 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
3 Hb_002374_480 0.0332346362 - - Photosystem II 22 kDa protein, chloroplast precursor, putative [Ricinus communis]
4 Hb_004129_170 0.0373541998 - - PREDICTED: protein trichome birefringence-like 43 [Jatropha curcas]
5 Hb_132840_050 0.0381239917 - - PREDICTED: protein CURVATURE THYLAKOID 1B, chloroplastic [Jatropha curcas]
6 Hb_000251_160 0.0382826279 - - chlorophyll A/B binding protein, putative [Ricinus communis]
7 Hb_002890_170 0.0512179932 transcription factor TF Family: zf-HD PREDICTED: zinc-finger homeodomain protein 4-like [Populus euphratica]
8 Hb_000373_210 0.0520486136 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-2-like [Jatropha curcas]
9 Hb_000825_010 0.0533430296 - - PREDICTED: trans-cinnamate 4-monooxygenase [Jatropha curcas]
10 Hb_002400_200 0.0543477203 - - 14 kDa proline-rich protein DC2.15 precursor, putative [Ricinus communis]
11 Hb_086022_020 0.0610795322 - - RecName: Full=Ribulose bisphosphate carboxylase small chain, chloroplastic; Short=RuBisCO small subunit; Flags: Precursor [Hevea brasiliensis]
12 Hb_000243_190 0.0612762545 transcription factor TF Family: MIKC flowering-related B-class MADS-box protein [Vitis vinifera]
13 Hb_016334_010 0.0636983261 - - hypothetical protein JCGZ_01311 [Jatropha curcas]
14 Hb_082402_020 0.0641207065 - - PREDICTED: aluminum-activated malate transporter 8-like [Jatropha curcas]
15 Hb_001053_070 0.0641537699 desease resistance Gene Name: NB-ARC hypothetical protein EUGRSUZ_B02976 [Eucalyptus grandis]
16 Hb_005483_050 0.064661364 - - conserved hypothetical protein [Ricinus communis]
17 Hb_031862_220 0.0688504951 - - PREDICTED: cyclin-D4-1-like [Jatropha curcas]
18 Hb_001049_130 0.0694931778 - - 50S ribosomal protein L18, chloroplast precursor, putative [Ricinus communis]
19 Hb_005375_090 0.0697655378 - - PREDICTED: protein CURVATURE THYLAKOID 1B, chloroplastic [Jatropha curcas]
20 Hb_001104_080 0.0707200281 - - peroxiredoxin, putative [Ricinus communis]

Gene co-expression network

sample Hb_153106_010 Hb_153106_010 Hb_180007_010 Hb_180007_010 Hb_153106_010--Hb_180007_010 Hb_002374_480 Hb_002374_480 Hb_153106_010--Hb_002374_480 Hb_004129_170 Hb_004129_170 Hb_153106_010--Hb_004129_170 Hb_132840_050 Hb_132840_050 Hb_153106_010--Hb_132840_050 Hb_000251_160 Hb_000251_160 Hb_153106_010--Hb_000251_160 Hb_002890_170 Hb_002890_170 Hb_153106_010--Hb_002890_170 Hb_180007_010--Hb_002374_480 Hb_180007_010--Hb_132840_050 Hb_180007_010--Hb_000251_160 Hb_000373_210 Hb_000373_210 Hb_180007_010--Hb_000373_210 Hb_180007_010--Hb_004129_170 Hb_002374_480--Hb_004129_170 Hb_002374_480--Hb_000251_160 Hb_002374_480--Hb_000373_210 Hb_002400_200 Hb_002400_200 Hb_002374_480--Hb_002400_200 Hb_004129_170--Hb_000251_160 Hb_086022_020 Hb_086022_020 Hb_004129_170--Hb_086022_020 Hb_003747_090 Hb_003747_090 Hb_004129_170--Hb_003747_090 Hb_000243_190 Hb_000243_190 Hb_132840_050--Hb_000243_190 Hb_016334_010 Hb_016334_010 Hb_132840_050--Hb_016334_010 Hb_132840_050--Hb_000251_160 Hb_000825_010 Hb_000825_010 Hb_132840_050--Hb_000825_010 Hb_000251_160--Hb_086022_020 Hb_082402_020 Hb_082402_020 Hb_002890_170--Hb_082402_020 Hb_002890_170--Hb_002400_200 Hb_002890_170--Hb_003747_090 Hb_005375_090 Hb_005375_090 Hb_002890_170--Hb_005375_090 Hb_002890_170--Hb_004129_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 1.80002 0.68645 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 4.93582

CAGE analysis