Hb_002374_480

Information

Type -
Description -
Location Contig2374: 406262-407482
Sequence    

Annotation

kegg
ID rcu:RCOM_1030930
description Photosystem II 22 kDa protein, chloroplast precursor, putative
nr
ID XP_002513761.1
description Photosystem II 22 kDa protein, chloroplast precursor, putative [Ricinus communis]
swissprot
ID Q02060
description Photosystem II 22 kDa protein, chloroplastic OS=Spinacia oleracea GN=PSBS PE=1 SV=1
trembl
ID B9RJ42
description Photosystem II 22 kDa protein, chloroplast, putative OS=Ricinus communis GN=RCOM_1030930 PE=4 SV=1
Gene Ontology
ID GO:0009517
description photosystem ii 22 kda chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24915: 406151-407626
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002374_480 0.0 - - Photosystem II 22 kDa protein, chloroplast precursor, putative [Ricinus communis]
2 Hb_180007_010 0.0330333144 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
3 Hb_004129_170 0.0330828897 - - PREDICTED: protein trichome birefringence-like 43 [Jatropha curcas]
4 Hb_153106_010 0.0332346362 - - hypothetical protein JCGZ_01308 [Jatropha curcas]
5 Hb_000251_160 0.0358748313 - - chlorophyll A/B binding protein, putative [Ricinus communis]
6 Hb_000373_210 0.0374733467 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-2-like [Jatropha curcas]
7 Hb_002400_200 0.0406521259 - - 14 kDa proline-rich protein DC2.15 precursor, putative [Ricinus communis]
8 Hb_001053_070 0.0498596111 desease resistance Gene Name: NB-ARC hypothetical protein EUGRSUZ_B02976 [Eucalyptus grandis]
9 Hb_086022_020 0.0511847608 - - RecName: Full=Ribulose bisphosphate carboxylase small chain, chloroplastic; Short=RuBisCO small subunit; Flags: Precursor [Hevea brasiliensis]
10 Hb_005375_090 0.0517390951 - - PREDICTED: protein CURVATURE THYLAKOID 1B, chloroplastic [Jatropha curcas]
11 Hb_132840_050 0.0522459804 - - PREDICTED: protein CURVATURE THYLAKOID 1B, chloroplastic [Jatropha curcas]
12 Hb_002890_170 0.0533052215 transcription factor TF Family: zf-HD PREDICTED: zinc-finger homeodomain protein 4-like [Populus euphratica]
13 Hb_001049_130 0.0548312355 - - 50S ribosomal protein L18, chloroplast precursor, putative [Ricinus communis]
14 Hb_001936_100 0.0560207632 - - conserved hypothetical protein [Ricinus communis]
15 Hb_031862_220 0.0564251835 - - PREDICTED: cyclin-D4-1-like [Jatropha curcas]
16 Hb_003747_090 0.0580540182 - - PREDICTED: glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic isoform X2 [Jatropha curcas]
17 Hb_082402_020 0.0634709252 - - PREDICTED: aluminum-activated malate transporter 8-like [Jatropha curcas]
18 Hb_013405_110 0.0656708386 - - multidrug resistance pump, putative [Ricinus communis]
19 Hb_001348_160 0.06593695 - - Photosystem II 22 kDa protein, chloroplast precursor, putative [Ricinus communis]
20 Hb_000825_010 0.0678362075 - - PREDICTED: trans-cinnamate 4-monooxygenase [Jatropha curcas]

Gene co-expression network

sample Hb_002374_480 Hb_002374_480 Hb_180007_010 Hb_180007_010 Hb_002374_480--Hb_180007_010 Hb_004129_170 Hb_004129_170 Hb_002374_480--Hb_004129_170 Hb_153106_010 Hb_153106_010 Hb_002374_480--Hb_153106_010 Hb_000251_160 Hb_000251_160 Hb_002374_480--Hb_000251_160 Hb_000373_210 Hb_000373_210 Hb_002374_480--Hb_000373_210 Hb_002400_200 Hb_002400_200 Hb_002374_480--Hb_002400_200 Hb_180007_010--Hb_153106_010 Hb_132840_050 Hb_132840_050 Hb_180007_010--Hb_132840_050 Hb_180007_010--Hb_000251_160 Hb_180007_010--Hb_000373_210 Hb_180007_010--Hb_004129_170 Hb_004129_170--Hb_000251_160 Hb_086022_020 Hb_086022_020 Hb_004129_170--Hb_086022_020 Hb_004129_170--Hb_153106_010 Hb_003747_090 Hb_003747_090 Hb_004129_170--Hb_003747_090 Hb_153106_010--Hb_132840_050 Hb_153106_010--Hb_000251_160 Hb_002890_170 Hb_002890_170 Hb_153106_010--Hb_002890_170 Hb_000251_160--Hb_086022_020 Hb_000251_160--Hb_132840_050 Hb_001053_070 Hb_001053_070 Hb_000373_210--Hb_001053_070 Hb_031862_220 Hb_031862_220 Hb_000373_210--Hb_031862_220 Hb_001049_130 Hb_001049_130 Hb_000373_210--Hb_001049_130 Hb_001936_100 Hb_001936_100 Hb_000373_210--Hb_001936_100 Hb_002400_200--Hb_001936_100 Hb_002400_200--Hb_001053_070 Hb_002400_200--Hb_002890_170 Hb_002400_200--Hb_000373_210 Hb_002400_200--Hb_001049_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.409492 279.08 117.144 0 0.0668127
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.322457 0.557828 0 0.0205024 715.175

CAGE analysis