Hb_001053_070

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig1053: 45020-51032
Sequence    

Annotation

kegg
ID vvi:100264908
description putative disease resistance RPP13-like protein 1
nr
ID KCW86291.1
description hypothetical protein EUGRSUZ_B02976 [Eucalyptus grandis]
swissprot
ID -
description -
trembl
ID A0A059D790
description Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_B02976 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001053_070 0.0 desease resistance Gene Name: NB-ARC hypothetical protein EUGRSUZ_B02976 [Eucalyptus grandis]
2 Hb_001049_130 0.0060015576 - - 50S ribosomal protein L18, chloroplast precursor, putative [Ricinus communis]
3 Hb_031862_220 0.0169338546 - - PREDICTED: cyclin-D4-1-like [Jatropha curcas]
4 Hb_000373_210 0.0247130059 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-2-like [Jatropha curcas]
5 Hb_001936_100 0.0272032313 - - conserved hypothetical protein [Ricinus communis]
6 Hb_002400_200 0.0391628259 - - 14 kDa proline-rich protein DC2.15 precursor, putative [Ricinus communis]
7 Hb_000987_030 0.0463046002 transcription factor TF Family: BES1 hypothetical protein POPTR_0016s13350g [Populus trichocarpa]
8 Hb_002374_480 0.0498596111 - - Photosystem II 22 kDa protein, chloroplast precursor, putative [Ricinus communis]
9 Hb_000251_150 0.052299453 - - PREDICTED: probable starch synthase 4, chloroplastic/amyloplastic isoform X2 [Jatropha curcas]
10 Hb_180007_010 0.0547507114 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
11 Hb_004452_070 0.0560818604 transcription factor TF Family: TCP transcription factor, putative [Ricinus communis]
12 Hb_005743_050 0.0589741347 - - unnamed protein product [Coffea canephora]
13 Hb_000703_340 0.0594422127 - - Oxygen-evolving enhancer protein 2, chloroplast precursor, putative [Ricinus communis]
14 Hb_000979_120 0.0618840228 - - Pectinesterase-1 precursor, putative [Ricinus communis]
15 Hb_153106_010 0.0641537699 - - hypothetical protein JCGZ_01308 [Jatropha curcas]
16 Hb_004129_170 0.0647127756 - - PREDICTED: protein trichome birefringence-like 43 [Jatropha curcas]
17 Hb_001348_160 0.065089906 - - Photosystem II 22 kDa protein, chloroplast precursor, putative [Ricinus communis]
18 Hb_003186_030 0.0671785527 transcription factor TF Family: MYB hypothetical protein POPTR_0012s05720g [Populus trichocarpa]
19 Hb_029879_020 0.0693691199 - - PREDICTED: cytochrome P450 77A1 [Jatropha curcas]
20 Hb_004899_190 0.0701645811 - - RecName: Full=Peroxiredoxin Q, chloroplastic; AltName: Full=Thioredoxin reductase; Flags: Precursor [Populus x jackii]

Gene co-expression network

sample Hb_001053_070 Hb_001053_070 Hb_001049_130 Hb_001049_130 Hb_001053_070--Hb_001049_130 Hb_031862_220 Hb_031862_220 Hb_001053_070--Hb_031862_220 Hb_000373_210 Hb_000373_210 Hb_001053_070--Hb_000373_210 Hb_001936_100 Hb_001936_100 Hb_001053_070--Hb_001936_100 Hb_002400_200 Hb_002400_200 Hb_001053_070--Hb_002400_200 Hb_000987_030 Hb_000987_030 Hb_001053_070--Hb_000987_030 Hb_001049_130--Hb_031862_220 Hb_001049_130--Hb_000373_210 Hb_001049_130--Hb_001936_100 Hb_001049_130--Hb_000987_030 Hb_001049_130--Hb_002400_200 Hb_031862_220--Hb_000373_210 Hb_031862_220--Hb_001936_100 Hb_031862_220--Hb_000987_030 Hb_000251_150 Hb_000251_150 Hb_031862_220--Hb_000251_150 Hb_002374_480 Hb_002374_480 Hb_000373_210--Hb_002374_480 Hb_180007_010 Hb_180007_010 Hb_000373_210--Hb_180007_010 Hb_000373_210--Hb_001936_100 Hb_001936_100--Hb_002400_200 Hb_000703_340 Hb_000703_340 Hb_001936_100--Hb_000703_340 Hb_002400_200--Hb_002374_480 Hb_002890_170 Hb_002890_170 Hb_002400_200--Hb_002890_170 Hb_002400_200--Hb_000373_210 Hb_005743_050 Hb_005743_050 Hb_000987_030--Hb_005743_050 Hb_000987_030--Hb_000251_150 Hb_158001_010 Hb_158001_010 Hb_000987_030--Hb_158001_010 Hb_000979_120 Hb_000979_120 Hb_000987_030--Hb_000979_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.104903 0.0576737 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.255664

CAGE analysis