Hb_001049_130

Information

Type -
Description -
Location Contig1049: 227645-229544
Sequence    

Annotation

kegg
ID rcu:RCOM_1690720
description 50S ribosomal protein L18, chloroplast precursor, putative
nr
ID XP_002509912.1
description 50S ribosomal protein L18, chloroplast precursor, putative [Ricinus communis]
swissprot
ID Q9SX68
description 50S ribosomal protein L18, chloroplastic OS=Arabidopsis thaliana GN=RPL18 PE=2 SV=1
trembl
ID B9RCM8
description 50S ribosomal protein L18, chloroplast, putative OS=Ricinus communis GN=RCOM_1690720 PE=3 SV=1
Gene Ontology
ID GO:0043229
description 50s ribosomal protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01675: 228561-229524
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001049_130 0.0 - - 50S ribosomal protein L18, chloroplast precursor, putative [Ricinus communis]
2 Hb_001053_070 0.0060015576 desease resistance Gene Name: NB-ARC hypothetical protein EUGRSUZ_B02976 [Eucalyptus grandis]
3 Hb_031862_220 0.0141748031 - - PREDICTED: cyclin-D4-1-like [Jatropha curcas]
4 Hb_000373_210 0.0278775721 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-2-like [Jatropha curcas]
5 Hb_001936_100 0.0300181693 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000987_030 0.0410054448 transcription factor TF Family: BES1 hypothetical protein POPTR_0016s13350g [Populus trichocarpa]
7 Hb_002400_200 0.0443540203 - - 14 kDa proline-rich protein DC2.15 precursor, putative [Ricinus communis]
8 Hb_000251_150 0.0476275525 - - PREDICTED: probable starch synthase 4, chloroplastic/amyloplastic isoform X2 [Jatropha curcas]
9 Hb_002374_480 0.0548312355 - - Photosystem II 22 kDa protein, chloroplast precursor, putative [Ricinus communis]
10 Hb_004452_070 0.0550832064 transcription factor TF Family: TCP transcription factor, putative [Ricinus communis]
11 Hb_005743_050 0.0555284107 - - unnamed protein product [Coffea canephora]
12 Hb_000979_120 0.0580333336 - - Pectinesterase-1 precursor, putative [Ricinus communis]
13 Hb_180007_010 0.0593150319 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
14 Hb_000703_340 0.060609385 - - Oxygen-evolving enhancer protein 2, chloroplast precursor, putative [Ricinus communis]
15 Hb_029879_020 0.0638774379 - - PREDICTED: cytochrome P450 77A1 [Jatropha curcas]
16 Hb_001348_160 0.0650118037 - - Photosystem II 22 kDa protein, chloroplast precursor, putative [Ricinus communis]
17 Hb_003186_030 0.0655791188 transcription factor TF Family: MYB hypothetical protein POPTR_0012s05720g [Populus trichocarpa]
18 Hb_007317_030 0.0694298158 - - -
19 Hb_153106_010 0.0694931778 - - hypothetical protein JCGZ_01308 [Jatropha curcas]
20 Hb_004129_170 0.0697473787 - - PREDICTED: protein trichome birefringence-like 43 [Jatropha curcas]

Gene co-expression network

sample Hb_001049_130 Hb_001049_130 Hb_001053_070 Hb_001053_070 Hb_001049_130--Hb_001053_070 Hb_031862_220 Hb_031862_220 Hb_001049_130--Hb_031862_220 Hb_000373_210 Hb_000373_210 Hb_001049_130--Hb_000373_210 Hb_001936_100 Hb_001936_100 Hb_001049_130--Hb_001936_100 Hb_000987_030 Hb_000987_030 Hb_001049_130--Hb_000987_030 Hb_002400_200 Hb_002400_200 Hb_001049_130--Hb_002400_200 Hb_001053_070--Hb_031862_220 Hb_001053_070--Hb_000373_210 Hb_001053_070--Hb_001936_100 Hb_001053_070--Hb_002400_200 Hb_001053_070--Hb_000987_030 Hb_031862_220--Hb_000373_210 Hb_031862_220--Hb_001936_100 Hb_031862_220--Hb_000987_030 Hb_000251_150 Hb_000251_150 Hb_031862_220--Hb_000251_150 Hb_002374_480 Hb_002374_480 Hb_000373_210--Hb_002374_480 Hb_180007_010 Hb_180007_010 Hb_000373_210--Hb_180007_010 Hb_000373_210--Hb_001936_100 Hb_001936_100--Hb_002400_200 Hb_000703_340 Hb_000703_340 Hb_001936_100--Hb_000703_340 Hb_005743_050 Hb_005743_050 Hb_000987_030--Hb_005743_050 Hb_000987_030--Hb_000251_150 Hb_158001_010 Hb_158001_010 Hb_000987_030--Hb_158001_010 Hb_000979_120 Hb_000979_120 Hb_000987_030--Hb_000979_120 Hb_002400_200--Hb_002374_480 Hb_002890_170 Hb_002890_170 Hb_002400_200--Hb_002890_170 Hb_002400_200--Hb_000373_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 1.41311 0.811598 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 3.4606

CAGE analysis