Hb_158001_010

Information

Type -
Description -
Location Contig158001: 112-1103
Sequence    

Annotation

kegg
ID mdm:103446651
description G-type lectin S-receptor-like serine/threonine-protein kinase SD1-1
nr
ID XP_011015680.1
description PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1, partial [Populus euphratica]
swissprot
ID Q9S972
description Receptor-like serine/threonine-protein kinase SD1-6 OS=Arabidopsis thaliana GN=SD16 PE=1 SV=2
trembl
ID M5WZV5
description Serine/threonine-protein kinase OS=Prunus persica GN=PRUPE_ppa001414mg PE=3 SV=1
Gene Ontology
ID GO:0004672
description g-type lectin s-receptor-like serine threonine-protein kinase at1g11410

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_158001_010 0.0 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1, partial [Populus euphratica]
2 Hb_000987_030 0.0373666665 transcription factor TF Family: BES1 hypothetical protein POPTR_0016s13350g [Populus trichocarpa]
3 Hb_005743_050 0.0385813311 - - unnamed protein product [Coffea canephora]
4 Hb_085682_010 0.0390605208 - - -
5 Hb_001295_070 0.0422064031 - - PREDICTED: putative UPF0481 protein At3g02645 [Jatropha curcas]
6 Hb_000179_010 0.0463633287 - - PREDICTED: alkane hydroxylase MAH1-like [Jatropha curcas]
7 Hb_001507_060 0.0468767794 - - translation initiation factor eif-2b gamma subunit, putative [Ricinus communis]
8 Hb_000251_150 0.0489036747 - - PREDICTED: probable starch synthase 4, chloroplastic/amyloplastic isoform X2 [Jatropha curcas]
9 Hb_000139_170 0.0515528882 - - PREDICTED: uncharacterized protein LOC105631957 [Jatropha curcas]
10 Hb_001775_020 0.0525593165 - - hypothetical protein JCGZ_18787 [Jatropha curcas]
11 Hb_004837_010 0.0550344386 - - PREDICTED: aldehyde dehydrogenase family 3 member F1-like [Jatropha curcas]
12 Hb_007317_030 0.0554660571 - - -
13 Hb_000046_400 0.056448767 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000844_080 0.0567162063 transcription factor TF Family: G2-like hypothetical protein RCOM_1592640 [Ricinus communis]
15 Hb_029879_020 0.0610987561 - - PREDICTED: cytochrome P450 77A1 [Jatropha curcas]
16 Hb_000979_120 0.061568865 - - Pectinesterase-1 precursor, putative [Ricinus communis]
17 Hb_000329_120 0.0660220788 - - 21 kDa protein precursor, putative [Ricinus communis]
18 Hb_002328_080 0.069943837 - - short-chain dehydrogenase, putative [Ricinus communis]
19 Hb_009233_020 0.0714309365 - - PREDICTED: 3-ketoacyl-CoA synthase 12 [Jatropha curcas]
20 Hb_009707_020 0.0766457054 - - PREDICTED: 3-ketoacyl-CoA synthase 12 [Jatropha curcas]

Gene co-expression network

sample Hb_158001_010 Hb_158001_010 Hb_000987_030 Hb_000987_030 Hb_158001_010--Hb_000987_030 Hb_005743_050 Hb_005743_050 Hb_158001_010--Hb_005743_050 Hb_085682_010 Hb_085682_010 Hb_158001_010--Hb_085682_010 Hb_001295_070 Hb_001295_070 Hb_158001_010--Hb_001295_070 Hb_000179_010 Hb_000179_010 Hb_158001_010--Hb_000179_010 Hb_001507_060 Hb_001507_060 Hb_158001_010--Hb_001507_060 Hb_000987_030--Hb_005743_050 Hb_000251_150 Hb_000251_150 Hb_000987_030--Hb_000251_150 Hb_001049_130 Hb_001049_130 Hb_000987_030--Hb_001049_130 Hb_000979_120 Hb_000979_120 Hb_000987_030--Hb_000979_120 Hb_031862_220 Hb_031862_220 Hb_000987_030--Hb_031862_220 Hb_000139_170 Hb_000139_170 Hb_005743_050--Hb_000139_170 Hb_001775_020 Hb_001775_020 Hb_005743_050--Hb_001775_020 Hb_005743_050--Hb_001295_070 Hb_005743_050--Hb_000251_150 Hb_000329_120 Hb_000329_120 Hb_085682_010--Hb_000329_120 Hb_009233_020 Hb_009233_020 Hb_085682_010--Hb_009233_020 Hb_004837_010 Hb_004837_010 Hb_085682_010--Hb_004837_010 Hb_085682_010--Hb_001507_060 Hb_000077_020 Hb_000077_020 Hb_085682_010--Hb_000077_020 Hb_001295_070--Hb_001775_020 Hb_000844_080 Hb_000844_080 Hb_001295_070--Hb_000844_080 Hb_001295_070--Hb_001507_060 Hb_001295_070--Hb_000139_170 Hb_002328_080 Hb_002328_080 Hb_001295_070--Hb_002328_080 Hb_000179_010--Hb_004837_010 Hb_000179_010--Hb_000251_150 Hb_001307_050 Hb_001307_050 Hb_000179_010--Hb_001307_050 Hb_000046_400 Hb_000046_400 Hb_000179_010--Hb_000046_400 Hb_029991_010 Hb_029991_010 Hb_000179_010--Hb_029991_010 Hb_001507_060--Hb_000844_080 Hb_001507_060--Hb_001775_020 Hb_001507_060--Hb_002328_080 Hb_001507_060--Hb_000139_170 Hb_009707_020 Hb_009707_020 Hb_001507_060--Hb_009707_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.262751 0.209845 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.541271

CAGE analysis