Hb_000844_080

Information

Type transcription factor
Description TF Family: G2-like
Location Contig844: 94700-97541
Sequence    

Annotation

kegg
ID rcu:RCOM_1592640
description hypothetical protein
nr
ID XP_002510296.1
description hypothetical protein RCOM_1592640 [Ricinus communis]
swissprot
ID Q9FJV5
description Probable transcription factor KAN4 OS=Arabidopsis thaliana GN=KAN4 PE=1 SV=1
trembl
ID B9R7K3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1592640 PE=4 SV=1
Gene Ontology
ID GO:0003677
description probable transcription factor kan4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60183: 94938-97214
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000844_080 0.0 transcription factor TF Family: G2-like hypothetical protein RCOM_1592640 [Ricinus communis]
2 Hb_001775_020 0.0116003163 - - hypothetical protein JCGZ_18787 [Jatropha curcas]
3 Hb_001295_070 0.0145522692 - - PREDICTED: putative UPF0481 protein At3g02645 [Jatropha curcas]
4 Hb_001507_060 0.0221226412 - - translation initiation factor eif-2b gamma subunit, putative [Ricinus communis]
5 Hb_000139_170 0.024391653 - - PREDICTED: uncharacterized protein LOC105631957 [Jatropha curcas]
6 Hb_009707_020 0.0278365963 - - PREDICTED: 3-ketoacyl-CoA synthase 12 [Jatropha curcas]
7 Hb_002328_080 0.0284896501 - - short-chain dehydrogenase, putative [Ricinus communis]
8 Hb_000010_160 0.0337812842 - - Uncharacterized protein TCM_014508 [Theobroma cacao]
9 Hb_005743_050 0.0435437442 - - unnamed protein product [Coffea canephora]
10 Hb_011382_010 0.0444956934 - - hypothetical protein CICLE_v10028106mg [Citrus clementina]
11 Hb_003086_140 0.047031645 transcription factor TF Family: C2C2-YABBY PREDICTED: protein YABBY 6-like isoform X2 [Jatropha curcas]
12 Hb_007187_010 0.0483833998 - - hypothetical protein JCGZ_09061 [Jatropha curcas]
13 Hb_002014_150 0.0535962305 - - monooxygenase, putative [Ricinus communis]
14 Hb_163566_020 0.0554935158 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP17-1, chloroplastic isoform X2 [Jatropha curcas]
15 Hb_001205_220 0.0554968923 - - conserved hypothetical protein [Ricinus communis]
16 Hb_158001_010 0.0567162063 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1, partial [Populus euphratica]
17 Hb_074312_010 0.0604269229 - - PREDICTED: cytochrome P450 82A3-like [Jatropha curcas]
18 Hb_004993_020 0.060448467 - - PREDICTED: putative ribonuclease H protein At1g65750 [Beta vulgaris subsp. vulgaris]
19 Hb_000512_120 0.0624386621 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription factor NGA1-like [Jatropha curcas]
20 Hb_000731_150 0.0648887858 - - PREDICTED: cytochrome P450 77A1 [Jatropha curcas]

Gene co-expression network

sample Hb_000844_080 Hb_000844_080 Hb_001775_020 Hb_001775_020 Hb_000844_080--Hb_001775_020 Hb_001295_070 Hb_001295_070 Hb_000844_080--Hb_001295_070 Hb_001507_060 Hb_001507_060 Hb_000844_080--Hb_001507_060 Hb_000139_170 Hb_000139_170 Hb_000844_080--Hb_000139_170 Hb_009707_020 Hb_009707_020 Hb_000844_080--Hb_009707_020 Hb_002328_080 Hb_002328_080 Hb_000844_080--Hb_002328_080 Hb_001775_020--Hb_000139_170 Hb_001775_020--Hb_001295_070 Hb_001775_020--Hb_001507_060 Hb_001775_020--Hb_009707_020 Hb_005743_050 Hb_005743_050 Hb_001775_020--Hb_005743_050 Hb_001295_070--Hb_001507_060 Hb_001295_070--Hb_000139_170 Hb_001295_070--Hb_005743_050 Hb_001295_070--Hb_002328_080 Hb_001507_060--Hb_002328_080 Hb_001507_060--Hb_000139_170 Hb_001507_060--Hb_009707_020 Hb_000139_170--Hb_005743_050 Hb_000139_170--Hb_009707_020 Hb_009707_020--Hb_002328_080 Hb_011382_010 Hb_011382_010 Hb_009707_020--Hb_011382_010 Hb_007187_010 Hb_007187_010 Hb_009707_020--Hb_007187_010 Hb_000010_160 Hb_000010_160 Hb_009707_020--Hb_000010_160 Hb_002328_080--Hb_001775_020 Hb_002328_080--Hb_000010_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 3.46176 1.99396 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 5.3918

CAGE analysis