Hb_009707_020

Information

Type -
Description -
Location Contig9707: 42238-43635
Sequence    

Annotation

kegg
ID rcu:RCOM_1227380
description acyltransferase, putative
nr
ID XP_012064956.1
description PREDICTED: 3-ketoacyl-CoA synthase 12 [Jatropha curcas]
swissprot
ID Q9LQP8
description 3-ketoacyl-CoA synthase 3 OS=Arabidopsis thaliana GN=KCS3 PE=2 SV=3
trembl
ID A0A067LAD5
description 3-ketoacyl-CoA synthase OS=Jatropha curcas GN=JCGZ_05640 PE=3 SV=1
Gene Ontology
ID GO:0016020
description 3-ketoacyl- synthase 12

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 030_J08.ab1: 42142-42887 , 051_N14.ab1: 42138-42780

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009707_020 0.0 - - PREDICTED: 3-ketoacyl-CoA synthase 12 [Jatropha curcas]
2 Hb_002328_080 0.0224792343 - - short-chain dehydrogenase, putative [Ricinus communis]
3 Hb_011382_010 0.0259201254 - - hypothetical protein CICLE_v10028106mg [Citrus clementina]
4 Hb_007187_010 0.0263698035 - - hypothetical protein JCGZ_09061 [Jatropha curcas]
5 Hb_000844_080 0.0278365963 transcription factor TF Family: G2-like hypothetical protein RCOM_1592640 [Ricinus communis]
6 Hb_000010_160 0.0284782379 - - Uncharacterized protein TCM_014508 [Theobroma cacao]
7 Hb_001775_020 0.0310939 - - hypothetical protein JCGZ_18787 [Jatropha curcas]
8 Hb_000139_170 0.0382246352 - - PREDICTED: uncharacterized protein LOC105631957 [Jatropha curcas]
9 Hb_001295_070 0.0382384076 - - PREDICTED: putative UPF0481 protein At3g02645 [Jatropha curcas]
10 Hb_000512_120 0.0417438319 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription factor NGA1-like [Jatropha curcas]
11 Hb_163566_020 0.0418124892 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP17-1, chloroplastic isoform X2 [Jatropha curcas]
12 Hb_001205_220 0.0425544811 - - conserved hypothetical protein [Ricinus communis]
13 Hb_074312_010 0.0429580586 - - PREDICTED: cytochrome P450 82A3-like [Jatropha curcas]
14 Hb_001507_060 0.0436289496 - - translation initiation factor eif-2b gamma subunit, putative [Ricinus communis]
15 Hb_002014_150 0.0464683139 - - monooxygenase, putative [Ricinus communis]
16 Hb_003086_140 0.0505570472 transcription factor TF Family: C2C2-YABBY PREDICTED: protein YABBY 6-like isoform X2 [Jatropha curcas]
17 Hb_005610_070 0.0523760534 - - PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus sinensis]
18 Hb_000731_150 0.0525079669 - - PREDICTED: cytochrome P450 77A1 [Jatropha curcas]
19 Hb_005743_050 0.0566766723 - - unnamed protein product [Coffea canephora]
20 Hb_004993_020 0.0606371635 - - PREDICTED: putative ribonuclease H protein At1g65750 [Beta vulgaris subsp. vulgaris]

Gene co-expression network

sample Hb_009707_020 Hb_009707_020 Hb_002328_080 Hb_002328_080 Hb_009707_020--Hb_002328_080 Hb_011382_010 Hb_011382_010 Hb_009707_020--Hb_011382_010 Hb_007187_010 Hb_007187_010 Hb_009707_020--Hb_007187_010 Hb_000844_080 Hb_000844_080 Hb_009707_020--Hb_000844_080 Hb_000010_160 Hb_000010_160 Hb_009707_020--Hb_000010_160 Hb_001775_020 Hb_001775_020 Hb_009707_020--Hb_001775_020 Hb_002328_080--Hb_000844_080 Hb_001507_060 Hb_001507_060 Hb_002328_080--Hb_001507_060 Hb_001295_070 Hb_001295_070 Hb_002328_080--Hb_001295_070 Hb_002328_080--Hb_001775_020 Hb_002328_080--Hb_000010_160 Hb_011382_010--Hb_000010_160 Hb_011382_010--Hb_007187_010 Hb_074312_010 Hb_074312_010 Hb_011382_010--Hb_074312_010 Hb_001205_220 Hb_001205_220 Hb_011382_010--Hb_001205_220 Hb_005610_070 Hb_005610_070 Hb_011382_010--Hb_005610_070 Hb_007187_010--Hb_074312_010 Hb_007187_010--Hb_000010_160 Hb_007187_010--Hb_001205_220 Hb_000512_120 Hb_000512_120 Hb_007187_010--Hb_000512_120 Hb_000844_080--Hb_001775_020 Hb_000844_080--Hb_001295_070 Hb_000844_080--Hb_001507_060 Hb_000139_170 Hb_000139_170 Hb_000844_080--Hb_000139_170 Hb_000010_160--Hb_001205_220 Hb_000010_160--Hb_000844_080 Hb_001775_020--Hb_000139_170 Hb_001775_020--Hb_001295_070 Hb_001775_020--Hb_001507_060 Hb_005743_050 Hb_005743_050 Hb_001775_020--Hb_005743_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.137958 62.8712 32.2349 0 0.0150833
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0213003 91.7248

CAGE analysis