Hb_001205_220

Information

Type -
Description -
Location Contig1205: 154925-155413
Sequence    

Annotation

kegg
ID rcu:RCOM_0403780
description hypothetical protein
nr
ID XP_002531908.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9T0Y9
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0403780 PE=4 SV=1
Gene Ontology
ID GO:0005739
description at3g50680 t3a5_60

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 015_K06.ab1: 154786-155456 , 023_C04.ab1: 154862-155472

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001205_220 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_011382_010 0.0291481532 - - hypothetical protein CICLE_v10028106mg [Citrus clementina]
3 Hb_000010_160 0.0292139974 - - Uncharacterized protein TCM_014508 [Theobroma cacao]
4 Hb_007187_010 0.0330806034 - - hypothetical protein JCGZ_09061 [Jatropha curcas]
5 Hb_001519_140 0.0349771814 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like [Vitis vinifera]
6 Hb_000731_150 0.0383411652 - - PREDICTED: cytochrome P450 77A1 [Jatropha curcas]
7 Hb_074312_010 0.041069627 - - PREDICTED: cytochrome P450 82A3-like [Jatropha curcas]
8 Hb_014056_020 0.0416089166 - - zinc finger protein, putative [Ricinus communis]
9 Hb_002965_170 0.0419173324 transcription factor TF Family: MYB PREDICTED: myb-related protein P [Jatropha curcas]
10 Hb_009707_020 0.0425544811 - - PREDICTED: 3-ketoacyl-CoA synthase 12 [Jatropha curcas]
11 Hb_005610_070 0.0449364317 - - PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus sinensis]
12 Hb_000512_120 0.0461705348 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription factor NGA1-like [Jatropha curcas]
13 Hb_004993_020 0.0473328823 - - PREDICTED: putative ribonuclease H protein At1g65750 [Beta vulgaris subsp. vulgaris]
14 Hb_002328_080 0.0487825054 - - short-chain dehydrogenase, putative [Ricinus communis]
15 Hb_002743_010 0.0494210155 - - conserved hypothetical protein [Ricinus communis]
16 Hb_005280_020 0.0522274569 - - glycine cleavage system h protein, putative [Ricinus communis]
17 Hb_000844_080 0.0554968923 transcription factor TF Family: G2-like hypothetical protein RCOM_1592640 [Ricinus communis]
18 Hb_003086_140 0.0570307438 transcription factor TF Family: C2C2-YABBY PREDICTED: protein YABBY 6-like isoform X2 [Jatropha curcas]
19 Hb_163566_020 0.0577696579 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP17-1, chloroplastic isoform X2 [Jatropha curcas]
20 Hb_000333_010 0.0601813622 - - hypothetical protein POPTR_0006s14510g [Populus trichocarpa]

Gene co-expression network

sample Hb_001205_220 Hb_001205_220 Hb_011382_010 Hb_011382_010 Hb_001205_220--Hb_011382_010 Hb_000010_160 Hb_000010_160 Hb_001205_220--Hb_000010_160 Hb_007187_010 Hb_007187_010 Hb_001205_220--Hb_007187_010 Hb_001519_140 Hb_001519_140 Hb_001205_220--Hb_001519_140 Hb_000731_150 Hb_000731_150 Hb_001205_220--Hb_000731_150 Hb_074312_010 Hb_074312_010 Hb_001205_220--Hb_074312_010 Hb_011382_010--Hb_000010_160 Hb_011382_010--Hb_007187_010 Hb_011382_010--Hb_074312_010 Hb_009707_020 Hb_009707_020 Hb_011382_010--Hb_009707_020 Hb_005610_070 Hb_005610_070 Hb_011382_010--Hb_005610_070 Hb_000010_160--Hb_009707_020 Hb_000010_160--Hb_007187_010 Hb_000844_080 Hb_000844_080 Hb_000010_160--Hb_000844_080 Hb_002328_080 Hb_002328_080 Hb_000010_160--Hb_002328_080 Hb_007187_010--Hb_009707_020 Hb_007187_010--Hb_074312_010 Hb_000512_120 Hb_000512_120 Hb_007187_010--Hb_000512_120 Hb_002965_170 Hb_002965_170 Hb_001519_140--Hb_002965_170 Hb_014056_020 Hb_014056_020 Hb_001519_140--Hb_014056_020 Hb_004993_020 Hb_004993_020 Hb_001519_140--Hb_004993_020 Hb_001519_140--Hb_000010_160 Hb_006117_030 Hb_006117_030 Hb_001519_140--Hb_006117_030 Hb_000731_150--Hb_004993_020 Hb_002743_010 Hb_002743_010 Hb_000731_150--Hb_002743_010 Hb_000557_070 Hb_000557_070 Hb_000731_150--Hb_000557_070 Hb_000731_150--Hb_001519_140 Hb_068580_010 Hb_068580_010 Hb_000731_150--Hb_068580_010 Hb_074312_010--Hb_005610_070 Hb_163566_020 Hb_163566_020 Hb_074312_010--Hb_163566_020 Hb_002014_150 Hb_002014_150 Hb_074312_010--Hb_002014_150 Hb_010288_070 Hb_010288_070 Hb_074312_010--Hb_010288_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.102097 115.516 52.1059 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.139242 0.109385 0 0 140.184

CAGE analysis