Hb_010288_070

Information

Type transcription factor
Description TF Family: MYB
Location Contig10288: 64151-65966
Sequence    

Annotation

kegg
ID tcc:TCM_004777
description MYB-like DNA-binding domain protein
nr
ID XP_007051069.1
description MYB-like DNA-binding domain protein [Theobroma cacao]
swissprot
ID P27898
description Myb-related protein P OS=Zea mays GN=P PE=2 SV=1
trembl
ID A0A061DT34
description MYB-like DNA-binding domain protein OS=Theobroma cacao GN=TCM_004777 PE=4 SV=1
Gene Ontology
ID GO:0003677
description myb-like dna-binding domain protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010288_070 0.0 transcription factor TF Family: MYB MYB-like DNA-binding domain protein [Theobroma cacao]
2 Hb_002304_030 0.022096564 - - hypothetical protein JCGZ_21517 [Jatropha curcas]
3 Hb_005888_020 0.0271335116 - - PREDICTED: uncharacterized protein LOC105127729 [Populus euphratica]
4 Hb_003032_080 0.0281899262 - - conserved hypothetical protein [Ricinus communis]
5 Hb_005610_070 0.028719781 - - PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus sinensis]
6 Hb_074312_010 0.0326600419 - - PREDICTED: cytochrome P450 82A3-like [Jatropha curcas]
7 Hb_003050_380 0.0363725524 - - hypothetical protein POPTR_0007s03380g [Populus trichocarpa]
8 Hb_001170_020 0.0383944537 - - conserved hypothetical protein [Ricinus communis]
9 Hb_005280_020 0.0402974008 - - glycine cleavage system h protein, putative [Ricinus communis]
10 Hb_000297_190 0.0403688225 - - cell wall invertase [Manihot esculenta]
11 Hb_163566_020 0.0413141865 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP17-1, chloroplastic isoform X2 [Jatropha curcas]
12 Hb_002014_150 0.0422006089 - - monooxygenase, putative [Ricinus communis]
13 Hb_005754_050 0.0528128119 - - PREDICTED: uncharacterized protein LOC105636679 [Jatropha curcas]
14 Hb_011382_010 0.0536542004 - - hypothetical protein CICLE_v10028106mg [Citrus clementina]
15 Hb_001862_040 0.0553909583 - - heat shock protein 70 (HSP70)-interacting protein, putative [Ricinus communis]
16 Hb_007187_010 0.0584752374 - - hypothetical protein JCGZ_09061 [Jatropha curcas]
17 Hb_001717_060 0.0641151103 - - PREDICTED: xylogen-like protein 11 [Gossypium raimondii]
18 Hb_000010_160 0.0659230655 - - Uncharacterized protein TCM_014508 [Theobroma cacao]
19 Hb_001205_220 0.0671233434 - - conserved hypothetical protein [Ricinus communis]
20 Hb_004464_040 0.0695884055 - - hypothetical protein JCGZ_01308 [Jatropha curcas]

Gene co-expression network

sample Hb_010288_070 Hb_010288_070 Hb_002304_030 Hb_002304_030 Hb_010288_070--Hb_002304_030 Hb_005888_020 Hb_005888_020 Hb_010288_070--Hb_005888_020 Hb_003032_080 Hb_003032_080 Hb_010288_070--Hb_003032_080 Hb_005610_070 Hb_005610_070 Hb_010288_070--Hb_005610_070 Hb_074312_010 Hb_074312_010 Hb_010288_070--Hb_074312_010 Hb_003050_380 Hb_003050_380 Hb_010288_070--Hb_003050_380 Hb_002304_030--Hb_005888_020 Hb_000297_190 Hb_000297_190 Hb_002304_030--Hb_000297_190 Hb_001170_020 Hb_001170_020 Hb_002304_030--Hb_001170_020 Hb_002304_030--Hb_005610_070 Hb_002304_030--Hb_003050_380 Hb_005888_020--Hb_001170_020 Hb_005888_020--Hb_000297_190 Hb_005888_020--Hb_003050_380 Hb_005888_020--Hb_005610_070 Hb_002014_150 Hb_002014_150 Hb_003032_080--Hb_002014_150 Hb_001862_040 Hb_001862_040 Hb_003032_080--Hb_001862_040 Hb_163566_020 Hb_163566_020 Hb_003032_080--Hb_163566_020 Hb_003032_080--Hb_005610_070 Hb_003032_080--Hb_074312_010 Hb_005610_070--Hb_074312_010 Hb_011382_010 Hb_011382_010 Hb_005610_070--Hb_011382_010 Hb_005610_070--Hb_002014_150 Hb_005610_070--Hb_163566_020 Hb_074312_010--Hb_011382_010 Hb_074312_010--Hb_163566_020 Hb_007187_010 Hb_007187_010 Hb_074312_010--Hb_007187_010 Hb_074312_010--Hb_002014_150 Hb_003050_380--Hb_001170_020 Hb_003050_380--Hb_000297_190 Hb_003050_380--Hb_003032_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0259733 72.7103 22.2561 0 0.0430541
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 93.329

CAGE analysis