Hb_003032_080

Information

Type -
Description -
Location Contig3032: 113261-114448
Sequence    

Annotation

kegg
ID rcu:RCOM_0826150
description hypothetical protein
nr
ID XP_002529355.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9STN6
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0826150 PE=4 SV=1
Gene Ontology
ID GO:0006811
description gras family transcription factor family

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003032_080 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_002014_150 0.0279443934 - - monooxygenase, putative [Ricinus communis]
3 Hb_010288_070 0.0281899262 transcription factor TF Family: MYB MYB-like DNA-binding domain protein [Theobroma cacao]
4 Hb_001862_040 0.031885899 - - heat shock protein 70 (HSP70)-interacting protein, putative [Ricinus communis]
5 Hb_163566_020 0.0321028636 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP17-1, chloroplastic isoform X2 [Jatropha curcas]
6 Hb_005610_070 0.0373145015 - - PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus sinensis]
7 Hb_074312_010 0.040380377 - - PREDICTED: cytochrome P450 82A3-like [Jatropha curcas]
8 Hb_003050_380 0.042262709 - - hypothetical protein POPTR_0007s03380g [Populus trichocarpa]
9 Hb_002304_030 0.0427199433 - - hypothetical protein JCGZ_21517 [Jatropha curcas]
10 Hb_005888_020 0.0461341644 - - PREDICTED: uncharacterized protein LOC105127729 [Populus euphratica]
11 Hb_001170_020 0.0541345704 - - conserved hypothetical protein [Ricinus communis]
12 Hb_005280_020 0.0559583043 - - glycine cleavage system h protein, putative [Ricinus communis]
13 Hb_000703_340 0.0580439594 - - Oxygen-evolving enhancer protein 2, chloroplast precursor, putative [Ricinus communis]
14 Hb_011382_010 0.0598323911 - - hypothetical protein CICLE_v10028106mg [Citrus clementina]
15 Hb_000297_190 0.062001688 - - cell wall invertase [Manihot esculenta]
16 Hb_000948_240 0.0627456578 - - conserved hypothetical protein [Ricinus communis]
17 Hb_005754_050 0.0637758599 - - PREDICTED: uncharacterized protein LOC105636679 [Jatropha curcas]
18 Hb_007187_010 0.0638748369 - - hypothetical protein JCGZ_09061 [Jatropha curcas]
19 Hb_004048_080 0.0664323821 - - hypothetical protein POPTR_0001s40360g [Populus trichocarpa]
20 Hb_002592_040 0.0681892763 - - ACC oxidase 3 [Hevea brasiliensis]

Gene co-expression network

sample Hb_003032_080 Hb_003032_080 Hb_002014_150 Hb_002014_150 Hb_003032_080--Hb_002014_150 Hb_010288_070 Hb_010288_070 Hb_003032_080--Hb_010288_070 Hb_001862_040 Hb_001862_040 Hb_003032_080--Hb_001862_040 Hb_163566_020 Hb_163566_020 Hb_003032_080--Hb_163566_020 Hb_005610_070 Hb_005610_070 Hb_003032_080--Hb_005610_070 Hb_074312_010 Hb_074312_010 Hb_003032_080--Hb_074312_010 Hb_002014_150--Hb_163566_020 Hb_002014_150--Hb_074312_010 Hb_002014_150--Hb_005610_070 Hb_011382_010 Hb_011382_010 Hb_002014_150--Hb_011382_010 Hb_002014_150--Hb_010288_070 Hb_002304_030 Hb_002304_030 Hb_010288_070--Hb_002304_030 Hb_005888_020 Hb_005888_020 Hb_010288_070--Hb_005888_020 Hb_010288_070--Hb_005610_070 Hb_010288_070--Hb_074312_010 Hb_003050_380 Hb_003050_380 Hb_010288_070--Hb_003050_380 Hb_082402_020 Hb_082402_020 Hb_001862_040--Hb_082402_020 Hb_000948_240 Hb_000948_240 Hb_001862_040--Hb_000948_240 Hb_002890_170 Hb_002890_170 Hb_001862_040--Hb_002890_170 Hb_001862_040--Hb_002014_150 Hb_001862_040--Hb_003050_380 Hb_163566_020--Hb_074312_010 Hb_163566_020--Hb_005610_070 Hb_163566_020--Hb_011382_010 Hb_007187_010 Hb_007187_010 Hb_163566_020--Hb_007187_010 Hb_005610_070--Hb_074312_010 Hb_005610_070--Hb_011382_010 Hb_005610_070--Hb_002304_030 Hb_074312_010--Hb_011382_010 Hb_074312_010--Hb_007187_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.229653 0.0743875 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.33404

CAGE analysis