Hb_011382_010

Information

Type -
Description -
Location Contig11382: 4294-16599
Sequence    

Annotation

kegg
ID cic:CICLE_v10028106mg
description hypothetical protein
nr
ID XP_006423576.1
description hypothetical protein CICLE_v10028106mg [Citrus clementina]
swissprot
ID Q651D5
description Probable aquaporin PIP2-7 OS=Oryza sativa subsp. japonica GN=PIP2-7 PE=2 SV=2
trembl
ID V4SIG0
description Uncharacterized protein OS=Citrus clementina GN=CICLE_v10028106mg PE=3 SV=1
Gene Ontology
ID GO:0016021
description aquaporin -like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04151: 4694-6160 , PASA_asmbl_04152: 4713-5220
cDNA
(Sanger)
(ID:Location)		 005_H02.ab1: 4702-5722 , 010_M07.ab1: 4699-5707 , 013_J10.ab1: 4699-5665 , 014_D03.ab1: 4694-5645 , 016_J01.ab1: 4702-5711 , 024_D21.ab1: 4694-5618 , 027_A06.ab1: 4699-5743 , 029_I21.ab1: 4690-5637 , 031_H22.ab1: 4699-5771 , 032_L19.ab1: 4699-5631 , 035_N08.ab1: 4699-5711 , 039_P04.ab1: 4694-5498 , 046_F07.ab1: 4696-5768 , 049_I22.ab1: 4702-5652 , 050_I07.ab1: 4699-5695

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011382_010 0.0 - - hypothetical protein CICLE_v10028106mg [Citrus clementina]
2 Hb_000010_160 0.020063717 - - Uncharacterized protein TCM_014508 [Theobroma cacao]
3 Hb_007187_010 0.0215414035 - - hypothetical protein JCGZ_09061 [Jatropha curcas]
4 Hb_074312_010 0.0251053021 - - PREDICTED: cytochrome P450 82A3-like [Jatropha curcas]
5 Hb_009707_020 0.0259201254 - - PREDICTED: 3-ketoacyl-CoA synthase 12 [Jatropha curcas]
6 Hb_001205_220 0.0291481532 - - conserved hypothetical protein [Ricinus communis]
7 Hb_005610_070 0.0315690266 - - PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus sinensis]
8 Hb_000512_120 0.0374599032 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription factor NGA1-like [Jatropha curcas]
9 Hb_163566_020 0.0379921596 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP17-1, chloroplastic isoform X2 [Jatropha curcas]
10 Hb_002014_150 0.0409701788 - - monooxygenase, putative [Ricinus communis]
11 Hb_002328_080 0.0421649303 - - short-chain dehydrogenase, putative [Ricinus communis]
12 Hb_000844_080 0.0444956934 transcription factor TF Family: G2-like hypothetical protein RCOM_1592640 [Ricinus communis]
13 Hb_001519_140 0.0462654566 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like [Vitis vinifera]
14 Hb_014056_020 0.0470088372 - - zinc finger protein, putative [Ricinus communis]
15 Hb_001775_020 0.0486090291 - - hypothetical protein JCGZ_18787 [Jatropha curcas]
16 Hb_005280_020 0.0489873459 - - glycine cleavage system h protein, putative [Ricinus communis]
17 Hb_000731_150 0.0503106901 - - PREDICTED: cytochrome P450 77A1 [Jatropha curcas]
18 Hb_002965_170 0.0525515861 transcription factor TF Family: MYB PREDICTED: myb-related protein P [Jatropha curcas]
19 Hb_010288_070 0.0536542004 transcription factor TF Family: MYB MYB-like DNA-binding domain protein [Theobroma cacao]
20 Hb_000139_170 0.055035962 - - PREDICTED: uncharacterized protein LOC105631957 [Jatropha curcas]

Gene co-expression network

sample Hb_011382_010 Hb_011382_010 Hb_000010_160 Hb_000010_160 Hb_011382_010--Hb_000010_160 Hb_007187_010 Hb_007187_010 Hb_011382_010--Hb_007187_010 Hb_074312_010 Hb_074312_010 Hb_011382_010--Hb_074312_010 Hb_009707_020 Hb_009707_020 Hb_011382_010--Hb_009707_020 Hb_001205_220 Hb_001205_220 Hb_011382_010--Hb_001205_220 Hb_005610_070 Hb_005610_070 Hb_011382_010--Hb_005610_070 Hb_000010_160--Hb_009707_020 Hb_000010_160--Hb_001205_220 Hb_000010_160--Hb_007187_010 Hb_000844_080 Hb_000844_080 Hb_000010_160--Hb_000844_080 Hb_002328_080 Hb_002328_080 Hb_000010_160--Hb_002328_080 Hb_007187_010--Hb_009707_020 Hb_007187_010--Hb_074312_010 Hb_007187_010--Hb_001205_220 Hb_000512_120 Hb_000512_120 Hb_007187_010--Hb_000512_120 Hb_074312_010--Hb_005610_070 Hb_163566_020 Hb_163566_020 Hb_074312_010--Hb_163566_020 Hb_002014_150 Hb_002014_150 Hb_074312_010--Hb_002014_150 Hb_010288_070 Hb_010288_070 Hb_074312_010--Hb_010288_070 Hb_009707_020--Hb_002328_080 Hb_009707_020--Hb_000844_080 Hb_001775_020 Hb_001775_020 Hb_009707_020--Hb_001775_020 Hb_001519_140 Hb_001519_140 Hb_001205_220--Hb_001519_140 Hb_000731_150 Hb_000731_150 Hb_001205_220--Hb_000731_150 Hb_001205_220--Hb_074312_010 Hb_005610_070--Hb_010288_070 Hb_005610_070--Hb_002014_150 Hb_002304_030 Hb_002304_030 Hb_005610_070--Hb_002304_030 Hb_005610_070--Hb_163566_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.37388 488.287 216.148 0 0.0688389
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.233761 641.469

CAGE analysis